Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294039.1:13234697-13236658[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.066 4.4 8.9 4.5 2 23 88 109 88 109 0.97

2 19 4.2e-07 2.8e-05 25.3 3.6 1 23 115 137 115 137 0.98

3 19 4.6e-06 0.00031 22.0 4.5 1 23 143 165 143 165 0.98

4 19 2e-05 0.0013 20.0 0.2 1 23 171 193 171 193 0.97

5 19 0.00016 0.011 17.1 1.8 1 23 199 221 199 221 0.98

6 19 1.1e-06 7.1e-05 24.0 2.5 1 23 227 249 227 249 0.99

7 19 1.7e-05 0.0011 20.2 6.1 1 23 255 277 255 277 0.98

8 19 0.11 7.1 8.3 9.1 1 23 283 305 283 305 0.99

9 19 5.3e-06 0.00035 21.8 1.2 1 23 311 333 311 333 0.98

10 19 0.00054 0.036 15.5 2.8 1 23 339 361 339 361 0.97

11 19 0.00058 0.039 15.4 2.7 1 23 367 389 367 389 0.98

12 19 3.6e-05 0.0024 19.2 3.7 1 23 399 422 399 422 0.96

13 19 2.8e-05 0.0019 19.5 1.9 1 23 428 450 428 450 0.99

14 19 6.4e-05 0.0043 18.4 1.5 1 23 456 478 456 478 0.98

15 19 9.1e-05 0.006 17.9 4.3 1 23 484 507 484 507 0.92

16 19 0.59 39 5.9 5.9 1 23 518 540 518 540 0.98

17 19 7.9e-06 0.00052 21.3 3.2 1 23 546 568 546 568 0.97

18 19 0.00021 0.014 16.8 1.9 3 23 576 596 574 596 0.96

19 19 0.0062 0.42 12.2 0.1 1 23 602 625 602 625 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.066	4.4	8.9	4.5	2	23	88	109	88	109	0.97
2	19	4.2e-07	2.8e-05	25.3	3.6	1	23	115	137	115	137	0.98
3	19	4.6e-06	0.00031	22.0	4.5	1	23	143	165	143	165	0.98
4	19	2e-05	0.0013	20.0	0.2	1	23	171	193	171	193	0.97
5	19	0.00016	0.011	17.1	1.8	1	23	199	221	199	221	0.98
6	19	1.1e-06	7.1e-05	24.0	2.5	1	23	227	249	227	249	0.99
7	19	1.7e-05	0.0011	20.2	6.1	1	23	255	277	255	277	0.98
8	19	0.11	7.1	8.3	9.1	1	23	283	305	283	305	0.99
9	19	5.3e-06	0.00035	21.8	1.2	1	23	311	333	311	333	0.98
10	19	0.00054	0.036	15.5	2.8	1	23	339	361	339	361	0.97
11	19	0.00058	0.039	15.4	2.7	1	23	367	389	367	389	0.98
12	19	3.6e-05	0.0024	19.2	3.7	1	23	399	422	399	422	0.96
13	19	2.8e-05	0.0019	19.5	1.9	1	23	428	450	428	450	0.99
14	19	6.4e-05	0.0043	18.4	1.5	1	23	456	478	456	478	0.98
15	19	9.1e-05	0.006	17.9	4.3	1	23	484	507	484	507	0.92
16	19	0.59	39	5.9	5.9	1	23	518	540	518	540	0.98
17	19	7.9e-06	0.00052	21.3	3.2	1	23	546	568	546	568	0.97
18	19	0.00021	0.014	16.8	1.9	3	23	576	596	574	596	0.96
19	19	0.0062	0.42	12.2	0.1	1	23	602	625	602	625	0.91

Sequence Information

Coding Sequence: ATGGACTTGATTAATGTAACGTCAGATATTTGTATTAAGCAAGAAGTTGTCGATCTTTGTAATCCAATAAAGCAAGAAGACCCCAATGGTAACACCacatcaaaaaatcaaataattggtttatttgaaaacattaaaatcgAAACTGTCAAGTTAGAAAATATCTCCGAGGTGGAATGCACTGCGGATGATAATATAGGCTGTGTCGTTTTTATCAAAGAAGAATTACAAAATGAAGCCTATATAAGCAACAAAGTACGTACCTGCCAGTTTTGTAGTAAAACGTTTCAATGTGATTCCCAACTCAATGTTCATATGAGGTCCCATAGCAATTTTCGACCGTTTTCATGTCACATCTGTTCTAAATCGTTTAAAGACATTTCTACGCTAAACTCTCACATGAGAACGCATTCGTCAGAAAGGCCGTTTAACTGTGAATCCTGTAGCAAATCATTTAAACTTAATTCGCACTTACAACGCCACATCAGGACTCACAATGGTGAAAAACCGTTCAAATGTGCCGAATGTCCAAAAGCATACACCACCAAACGGGGGCTAACTAATCACATAATCGGCCATTTAGGTACCAAACCGTTCAGTTGCTCTCTTTGTTCTAAAAccttcaaaaatgaaaaatcatTACCTGACCACAtgaaaactcacaccggggagaaaccatACActtgtgaattttgtaaaaaggCGTTTAGGCAAAAGCAGCAACTAACAGTTCACATCAAGACGCATACCGACGAAAGACCTCACAAGTGCGACGTTTGTTTGAAATCGTTCCGTGATAAGAGAACTTTAACCCATCATATCAGAACCCACACCGGGGAAAAGCCATATAAATGTGACCACTGTGAGTTTCGCTGTGCGAAAAAGCACACGTTAACTGTTCACTCTCGCCGACACACCGACGAAAAACCCTACGAATGCAGCTACTGCTACAAGCGGTTTGCGCAAAGTAGCAGCCTAGTGGTTCACCGTCGACTCCACACTGGAGAAAAACCGTACGTTTGTGACCAGTGCGGCCAAAGATTTACACTAAAATATAGTTTAAGGTATCATAAATATCGGCACGATGGCGTTCGAGCCTACAAGTGCGAATACTGTGAAAGTTCCTTCTTCACTCCGTTCTCGTTAAAATCTCACCGAAAGTTACACTTTGCTAGTAAACCAAAGAAAGCAATCTATAATTGCAAAATATGTGATAAGTTCTACTCGACGCGCTCCTCGTTAAAGTTACATCACTTGCGTGTccatgtaaaattaaaaaaattcaaatgttcGATGTGCCAGAGCGCCTTCGTCCATACCGCCGAGTTGAAACGCCACATGAGAATACACACCGGGGAAAAGAACCACAAATGCGAAGTATGCGAAAAGTTATTTTCTGCCAAACAAAGTTTGAGAATTCACATGAGGATCCACAACGGTGCAAAGCCCTACAAATGCAAGCACTGTTCTAAGGGTTTCACGACCAGCACgcaattaaaaattcataccgTAAATTTCCATTTTGACCTGATGAGTAAGGATATCAATTCGTACAAGTGTAATCAGTGTAGTTACTCGACACTACATAAAACTTACTACAAGCGCCATTTAGTGACGCATTTAGGGATAAAATTGTACAAGTGTTACATCTGCAACAAATCGTTTACCAGATCATATACCCTAAAATTACACGAACAAAATCACAGTGAGAAAAGTAACTTAGATTGTTTACACTGCAAGGAAAGTTTTCCGTCTAAGATGCTGCTACGTAAGCACCTGAAAGTACACAGGAATCCTAAACGGTACAAATGCATGCTTTGTTCTAAGGCGTTTGTTACTTCGACGGTTTTGAATATGCACGTCGCTGGAGTTCATAATAAAGTACGCGCTTTTAGATGTAAGGTTTGCACCTACAAAACTTTGAAGTTCAGTCTTTTCGTGAGGCATAAAGAATCACACTAA
Protein Sequence: MDLINVTSDICIKQEVVDLCNPIKQEDPNGNTTSKNQIIGLFENIKIETVKLENISEVECTADDNIGCVVFIKEELQNEAYISNKVRTCQFCSKTFQCDSQLNVHMRSHSNFRPFSCHICSKSFKDISTLNSHMRTHSSERPFNCESCSKSFKLNSHLQRHIRTHNGEKPFKCAECPKAYTTKRGLTNHIIGHLGTKPFSCSLCSKTFKNEKSLPDHMKTHTGEKPYTCEFCKKAFRQKQQLTVHIKTHTDERPHKCDVCLKSFRDKRTLTHHIRTHTGEKPYKCDHCEFRCAKKHTLTVHSRRHTDEKPYECSYCYKRFAQSSSLVVHRRLHTGEKPYVCDQCGQRFTLKYSLRYHKYRHDGVRAYKCEYCESSFFTPFSLKSHRKLHFASKPKKAIYNCKICDKFYSTRSSLKLHHLRVHVKLKKFKCSMCQSAFVHTAELKRHMRIHTGEKNHKCEVCEKLFSAKQSLRIHMRIHNGAKPYKCKHCSKGFTTSTQLKIHTVNFHFDLMSKDINSYKCNQCSYSTLHKTYYKRHLVTHLGIKLYKCYICNKSFTRSYTLKLHEQNHSEKSNLDCLHCKESFPSKMLLRKHLKVHRNPKRYKCMLCSKAFVTSTVLNMHVAGVHNKVRAFRCKVCTYKTLKFSLFVRHKESH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271522;
90% Identity: iTF_01292027;
80% Identity: -