Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996557.1:33112000-33114346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.14 4 8.9 4.5 2 23 89 110 89 110 0.97

2 19 2.2e-06 6.3e-05 24.0 3.7 1 23 116 138 116 138 0.98

3 19 9.7e-06 0.00028 22.0 4.5 1 23 144 166 144 166 0.98

4 19 4.2e-05 0.0012 20.0 0.2 1 23 172 194 172 194 0.97

5 19 0.00045 0.013 16.7 1.2 1 23 200 222 200 222 0.98

6 19 1.7e-06 4.8e-05 24.4 2.4 1 23 228 250 228 250 0.98

7 19 3.6e-05 0.001 20.2 6.1 1 23 256 278 256 278 0.98

8 19 0.22 6.4 8.3 9.1 1 23 284 306 284 306 0.99

9 19 1e-05 0.00029 21.9 1.3 1 23 312 334 312 334 0.98

10 19 0.0011 0.033 15.5 2.8 1 23 340 362 340 362 0.97

11 19 0.0012 0.035 15.4 2.7 1 23 368 390 368 390 0.98

12 19 7.5e-05 0.0022 19.2 3.7 1 23 400 423 400 423 0.96

13 19 5.9e-05 0.0017 19.5 2.0 1 23 429 451 429 451 0.99

14 19 3.9e-05 0.0011 20.1 1.5 1 23 457 479 457 479 0.98

15 19 0.00019 0.0055 17.9 4.3 1 23 485 508 485 508 0.92

16 19 0.086 2.5 9.6 5.0 1 23 519 541 519 541 0.98

17 19 8.9e-07 2.6e-05 25.3 3.3 1 23 547 569 547 569 0.99

18 19 0.00045 0.013 16.8 1.9 3 23 577 597 575 597 0.96

19 19 0.013 0.38 12.1 0.1 1 23 603 626 603 626 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.14	4	8.9	4.5	2	23	89	110	89	110	0.97
2	19	2.2e-06	6.3e-05	24.0	3.7	1	23	116	138	116	138	0.98
3	19	9.7e-06	0.00028	22.0	4.5	1	23	144	166	144	166	0.98
4	19	4.2e-05	0.0012	20.0	0.2	1	23	172	194	172	194	0.97
5	19	0.00045	0.013	16.7	1.2	1	23	200	222	200	222	0.98
6	19	1.7e-06	4.8e-05	24.4	2.4	1	23	228	250	228	250	0.98
7	19	3.6e-05	0.001	20.2	6.1	1	23	256	278	256	278	0.98
8	19	0.22	6.4	8.3	9.1	1	23	284	306	284	306	0.99
9	19	1e-05	0.00029	21.9	1.3	1	23	312	334	312	334	0.98
10	19	0.0011	0.033	15.5	2.8	1	23	340	362	340	362	0.97
11	19	0.0012	0.035	15.4	2.7	1	23	368	390	368	390	0.98
12	19	7.5e-05	0.0022	19.2	3.7	1	23	400	423	400	423	0.96
13	19	5.9e-05	0.0017	19.5	2.0	1	23	429	451	429	451	0.99
14	19	3.9e-05	0.0011	20.1	1.5	1	23	457	479	457	479	0.98
15	19	0.00019	0.0055	17.9	4.3	1	23	485	508	485	508	0.92
16	19	0.086	2.5	9.6	5.0	1	23	519	541	519	541	0.98
17	19	8.9e-07	2.6e-05	25.3	3.3	1	23	547	569	547	569	0.99
18	19	0.00045	0.013	16.8	1.9	3	23	577	597	575	597	0.96
19	19	0.013	0.38	12.1	0.1	1	23	603	626	603	626	0.91

Sequence Information

Coding Sequence: ATGGACTTGATTAATGTAACGTCAGATATTTGTATTAAACAAGAAGTTGTCGATGTTTGTAATCCAATAAAACAAGAAGACCCCAATGGTAACACCACATCAAAAAAACAATTAATTGGTTTATTTGAAAATATTAAAATCGAAACTGTCAAGTTAGAAAATATCTCGAAGGTGGAATGCACTGCGGATGATAACATAGGCTGTGTCGTTTTTATCAAAGAAGAATTACAACAAAATGACGCTTATATAAGCAACAAAGTACGTACTTGCCAGTTTTGCAGTAAAACGTTTCAATGTGATTCTCAACTTAATGTTCATATGAGGTCCCACAGCGATTTTCGACCCTTTTCATGTCACATCTGTTCGAAATCGTTTAAAGACATTTCTACACTTAACTCACATATGAAAACGCATTCGTCAGAAAGGCCGTTTAACTGTGAATCTTGTAGCAAATCATTTAAACTTAATTCGCACTTACAACGTCACATTAGGACTCACAATGGTGAAAAACCGTTTAAGTGTGCCGAATGTCCGAAAGCATACACCACCAAACGAGGGTTAACTAATCACATAATTGGCCATTTAGGTACCAAACCGTTCAGCTGCGGTCTTTGTTCTAAAACCTTTAAGAATGAAAAATCGTTACCTGATCACATGAAAACTCACACGGGGGAGAAACCGTACCCTTGTGAATTTTGTAAAAAGACGTTCAGGCAAAAACAGCAACTGACGGTTCACATCAAGACGCATACCGACGAAAGACCTCACAAGTGCGACGTTTGTTTGAAATCGTTCCGTGATAAGCGAACTTTGACCCATCATATCAGAACCCACACCGGGGAAAAGCCCTATAAATGTGACCACTGTGAGTTTCGGTGTGCGAAAAAACACACGTTAACTGTCCACTCTCGCCGACACACCGACGAGAAACCCTACGAATGCACCTACTGCTACAAACGATTTGCGCAAAGTAGCAGTCTAGTGGTCCATCGTCGACTCCACACCGGAGAAAAACCCTACGTTTGTGACCAATGCGGCCAAAGATTTACACTAAAATATAGTTTAAGGTACCACAAATATCGGCACGACGGCGTTAGAGCCTACAAGTGCGAATACTGTGAAAGCTCCTTCTTTACTCCCTTCTCGTTAAAATCTCACCGAAAGTTACACTTTGCTAGTAAACCAAAGAAAGCAATCTATAATTGCAAAATATGTGATAAGTTCTACTCGACGCGCTCCTCATTAAAGTTACATCACTTGCGTGTTCATGTAAAATTAAAAAAATTCAAATGTTCTATGTGTCAGAGCGCTTTCGTCCATACTGGCGAGTTGAAACGCCACATGAGAATACACACTGGGGAAAAAAACCACAAATGCGAAGTATGCGACAAGTTATTCTCTGCCAAACAAAGTTTGAGAATTCACATGAGGATCCACAACGGTGCAAAACCCTACAAATGCAAGCACTGTTCTAAGGGTTTCACGACCAGCACACAGTTAAAAATTCATACCGTAAATTTCCATTTTGACCTGATGAGTAAGGATTTCAATTCGTACAAGTGTAATCAGTGTGGTTACTCGACGTTACATAAAACTTACTACAAGCGCCACTTAGTGACGCATTTGGGGATAAAATTGTATAAGTGTTACATCTGCAACAAATCGTTTACCAGATCGTATACCCTAAAATTACACATACGAAATCACAGTGAGAAAAGTAACTTAGATTGTTTACACTGCAAGGAAAGTTTTCCGTCTAAGATGCTGCTACGCAAGCACCTGAAAGTGCACAGGAATCCTAAACGGTACAAATGTATGCTGTGTTCTAAGGCGTTTGTTACGTCCACCGTATTGAATATGCACGTCGCCGGAGTTCACAATAAAGTACGCGCTTTTAGATGTAAGGTTTGCACCTACAAAACTTTGAAGTACAGTCTTTTCGTGAGACATAAAGAATCCCACTAA
Protein Sequence: MDLINVTSDICIKQEVVDVCNPIKQEDPNGNTTSKKQLIGLFENIKIETVKLENISKVECTADDNIGCVVFIKEELQQNDAYISNKVRTCQFCSKTFQCDSQLNVHMRSHSDFRPFSCHICSKSFKDISTLNSHMKTHSSERPFNCESCSKSFKLNSHLQRHIRTHNGEKPFKCAECPKAYTTKRGLTNHIIGHLGTKPFSCGLCSKTFKNEKSLPDHMKTHTGEKPYPCEFCKKTFRQKQQLTVHIKTHTDERPHKCDVCLKSFRDKRTLTHHIRTHTGEKPYKCDHCEFRCAKKHTLTVHSRRHTDEKPYECTYCYKRFAQSSSLVVHRRLHTGEKPYVCDQCGQRFTLKYSLRYHKYRHDGVRAYKCEYCESSFFTPFSLKSHRKLHFASKPKKAIYNCKICDKFYSTRSSLKLHHLRVHVKLKKFKCSMCQSAFVHTGELKRHMRIHTGEKNHKCEVCDKLFSAKQSLRIHMRIHNGAKPYKCKHCSKGFTTSTQLKIHTVNFHFDLMSKDFNSYKCNQCGYSTLHKTYYKRHLVTHLGIKLYKCYICNKSFTRSYTLKLHIRNHSEKSNLDCLHCKESFPSKMLLRKHLKVHRNPKRYKCMLCSKAFVTSTVLNMHVAGVHNKVRAFRCKVCTYKTLKYSLFVRHKESH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271522;
90% Identity: iTF_01294078;
80% Identity: -