Basic Information

Insect: Rhagonycha lutea
Gene Symbol: ZNF236
Assembly: GCA_958510855.1
Location: OY294041.1:6048063-6057346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.00013 0.0084 17.5 4.0 1 23 121 143 121 143 0.99

2 24 0.0022 0.14 13.6 0.8 1 23 148 170 148 170 0.98

3 24 3.5e-05 0.0024 19.2 1.0 2 23 176 197 175 197 0.94

4 24 0.013 0.89 11.1 0.2 1 23 203 225 203 225 0.98

5 24 0.022 1.4 10.5 0.9 2 23 239 260 238 260 0.94

6 24 0.0021 0.14 13.6 6.9 1 23 287 309 287 309 0.98

7 24 3.5e-05 0.0023 19.2 0.1 1 23 315 337 315 337 0.98

8 24 0.00011 0.0075 17.6 3.4 1 23 343 366 343 366 0.98

9 24 0.027 1.8 10.2 1.5 1 23 376 399 376 399 0.96

10 24 5.3e-07 3.5e-05 25.0 0.3 1 23 474 496 474 496 0.98

11 24 0.00012 0.0078 17.6 5.5 1 23 502 524 502 524 0.97

12 24 0.0016 0.11 14.0 1.0 1 17 530 546 530 547 0.94

13 24 0.95 63 5.3 5.9 5 23 634 652 631 652 0.95

14 24 0.00011 0.0076 17.6 4.6 1 23 658 681 658 681 0.96

15 24 0.00031 0.021 16.3 0.9 1 23 687 709 687 709 0.95

16 24 0.11 7.3 8.2 6.0 1 23 715 737 715 737 0.96

17 24 9 6e+02 2.2 0.8 1 20 1049 1068 1049 1070 0.90

18 24 5.4e-05 0.0036 18.7 3.1 3 23 1131 1151 1130 1151 0.98

19 24 4.9e-06 0.00032 21.9 3.3 1 23 1157 1179 1157 1179 0.98

20 24 0.00016 0.011 17.1 0.1 1 23 1187 1209 1187 1209 0.97

21 24 0.00052 0.035 15.5 3.6 1 23 1215 1237 1215 1237 0.99

22 24 4e-05 0.0027 19.1 4.0 1 23 1377 1399 1377 1399 0.98

23 24 0.0011 0.073 14.5 2.4 2 23 1403 1424 1402 1424 0.96

24 24 0.0019 0.13 13.8 0.7 1 22 1430 1451 1430 1451 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.00013	0.0084	17.5	4.0	1	23	121	143	121	143	0.99
2	24	0.0022	0.14	13.6	0.8	1	23	148	170	148	170	0.98
3	24	3.5e-05	0.0024	19.2	1.0	2	23	176	197	175	197	0.94
4	24	0.013	0.89	11.1	0.2	1	23	203	225	203	225	0.98
5	24	0.022	1.4	10.5	0.9	2	23	239	260	238	260	0.94
6	24	0.0021	0.14	13.6	6.9	1	23	287	309	287	309	0.98
7	24	3.5e-05	0.0023	19.2	0.1	1	23	315	337	315	337	0.98
8	24	0.00011	0.0075	17.6	3.4	1	23	343	366	343	366	0.98
9	24	0.027	1.8	10.2	1.5	1	23	376	399	376	399	0.96
10	24	5.3e-07	3.5e-05	25.0	0.3	1	23	474	496	474	496	0.98
11	24	0.00012	0.0078	17.6	5.5	1	23	502	524	502	524	0.97
12	24	0.0016	0.11	14.0	1.0	1	17	530	546	530	547	0.94
13	24	0.95	63	5.3	5.9	5	23	634	652	631	652	0.95
14	24	0.00011	0.0076	17.6	4.6	1	23	658	681	658	681	0.96
15	24	0.00031	0.021	16.3	0.9	1	23	687	709	687	709	0.95
16	24	0.11	7.3	8.2	6.0	1	23	715	737	715	737	0.96
17	24	9	6e+02	2.2	0.8	1	20	1049	1068	1049	1070	0.90
18	24	5.4e-05	0.0036	18.7	3.1	3	23	1131	1151	1130	1151	0.98
19	24	4.9e-06	0.00032	21.9	3.3	1	23	1157	1179	1157	1179	0.98
20	24	0.00016	0.011	17.1	0.1	1	23	1187	1209	1187	1209	0.97
21	24	0.00052	0.035	15.5	3.6	1	23	1215	1237	1215	1237	0.99
22	24	4e-05	0.0027	19.1	4.0	1	23	1377	1399	1377	1399	0.98
23	24	0.0011	0.073	14.5	2.4	2	23	1403	1424	1402	1424	0.96
24	24	0.0019	0.13	13.8	0.7	1	22	1430	1451	1430	1451	0.95

Sequence Information

Coding Sequence: atgaaaaccaTTGACGAGGAGATTCCAACAAACTCTGAAGGATGTGAAATTTACACTTACATAGCGATACCGATTAATAGCCTTAAGCAGGGCAATGATATTATTCAATCTGTAGAACCTATGGAAATTGCATCCAATGTGCTTTACAACGTTTTACCTCACGACATtacaaatgaaaaaattcaaacgTACACTTTAACGGATCAGTTTATTGAAACTTTAAGAGCGAACAATCAGgagCACATTACAGGAGTAATTGAAAGTCAGGAAAGCTTAAGGCCTACAGTTATAGAACAAATCAGTAACACCAGGAAGTCGGTTATCTTGCAAACGAATTTAAATGAAGATGAGGCATCCGATTATAAGTGTAAGAGTTGCAATAAAGTGTTTAAAACGCGTTTGAGTTAccaaaagcatttaaaaatacacAAGGAGAAACCCTACAAGTGTTACGAGTGCTCGGCAAGTTACAACTACGAGAGTAATTTGAAGTTGCACAAAATTGTACACGAAGACAACGTCACCCAATGTCCTGTGTGTGAGAAATCATTTAACAGAAAGGCCAGTTTGAAAAATCATGTTACTTTTCACGAAATCGAAGAGACTTTTACATGTTCCGAATGCTTGGCTGAATTTGATTCCGAGGAAGAGTACAACAAGCACATTCAAAACCACAAAAGTGAGGCCCAATTAAAGTCACTACAAAAATCGTTAACTTGTTCGGTTTGTGACCAACAGTTTGAAAATCGTGCCAAGTATAAGGAACATTTATCATTTCACACCGaggtgaaaaaattaatgaagattaaAAAAACGCGTAAAAAACAACAAGTGGTGAAAAAAATCCCATCAAACTCCCATGTATGTGATGTGTGtaaaaagacattttccaaGTATTGCTTGCTTCTAAGACACAAGAGAACCCACACTGGTGAAAAGCCATATGCTtGCCAGTATTGCGATCGCGCCTTTGCACAAAAGGGAACCTTAGACGTTCACATAAAAATTCACACTGGATTGAAGGCATACCAGTGCACAATTTGTCAGGCCAAATTTAATCAAAGGTGTAATCTAAGGGCTCACGTTCGAAGAACTCATTTGCACGCAAATATCTCGGAAAAAACCTACAGTTGTCAGCTTTGCGCGTGCGTTTTCACGAGAATTGCATCTTTAAATGCTCATACCACCCGGTACCACAGAGGTGATAAGGAATCCCACGATATTATGGACCTCATGCAGCAAATAGACCAACTAGAAAACCAAATGAACAATAAAAGCAATCTTTCACTCAGTGAAATCTCGAGAAGAAATACAATTCAAAACgattcagaaaaatttgtaagaCTTGCCGATTCAAGTGTTGAAGGTTCTATACAATATTTGAGGGTAAAACAGAAAAAAACTCTTGAAGGATTGTGGTATGCCTGCTCCTATTGTGAGAAAGAGTTTAAAAAACCTTCGGATTTAATTCGCCATATTAGGATCCACACCATGCAAAAGCCTTTCAAAtgtAAGCATTGTAATCGTCGGTTCTCATTGCAATCGACACTTAAGAAGCACGTAAATGATCATGCCAATTTACGAAGTTATGAATGTACTATGTGCAAGAAGACTTTTAGTTCCAAGAGTGGTTTGAAAAATATCTCCAGgGTTAATGATAAAAGTGCGCCACCGAAACTTGCATGTGGTTCTTGCATGTCATTTGTTTCTGAATTTAAAGCCAAGCGcattaatattgaaaaattagatACCCAGAAgattctaaataatttaaatattgagaTTGAATTAAAACAACCAATTGTGGAAACTCCTGAAGGTTTGGTACCCATTATTTCACCCAAATCGAAGATTTATTTGGACAGTGCTAACTCCAATAAGCCTAAGTTGCACAAGTGCCATTGTGGATCTGAATTTTTTCGACTGAAGAATTTTCAGCAACACATGTTGACTCATACAagtgaaaagaaatttaaatgctCTATCTGCCCCAAatgtTTCCACAGTTCAAGCAAATTAAAGGAACATTTAAATTTGGTTCATAATGCCGAAAGAAAGTTTCTGTGCAGAATATGTGACAAACGTTTTGTTTCCAACTCCATTTTAAAGAGACATCTGATCACACACAGTCATATCAAACCTTACATCTGCCCTTACTGCAAAAAGCGTTTCAGAACCGTCCTACATTGTCGTCAACACATCAAACTTCACAAGAAAGAAGTCTTGTTAAGCACATTGGCAGGACCTGATGCTAACAAATTTACTGCTAGTTTTGTGACAGAGACACTTCCTGAAAATTTGTTTGCTAATGCGTTACCTGATGGTACCTACAATTTaggtttaaattttgataatttaaccGACTCCACTGATATACCTGGTGGCTCTAATCTTTTGTCTGAAGTTTCTGCAGGAGTAGAACAGAATGAAGGCGATTCTAGAACTCAAATTTTATACACTGATAAAAGCAGTGGAGTGATTGTTTCCACACCTTTGGATATTTCTCAGGCACATCAAGATGGGAAGAGTAAACTGGATCAACAGTTGTTTTTAACGTCCACTGCTTTGCCCAGTTATGATGACTCAACAAAAACTATTACTGcagataatttagaaaatgtaaatGATTCCATTACTAATTTACCACAAGAAAATCCGACGGTTTTCCTAAATTTTGACGATCTACAATTATCTACTTCTAATCTCTATAGCTCCtaccaaaatttgaaaaaTTTTGACCAACTATTGGGAGAAATAAGTGAAATTCCAGACAACAACATTTTGTTGACCTCTGATTCTAGTCTCAGTCAACTAACCGATTCTCAATTGGATTCTTCAAATTTCGATGGATTAATGCCGTTTGCTTTCAACACCAACTTATCCTTAAATAACGTCACTCTATCCAGCACAAATCCCTTCCCAAACGTCATTCTTTCAAATGTTGGTGAAGATGCAACTGACCTTAACCAAGCTCCACTTCCTAATCTACCTTATGACGTCAAAAAAGGTTCTGGGGAAGAAGAATCAGAGAAAATGATGGAAACAGAGCAGGAAAATCCACTTTTATCCAACCTTCTTGAAACTTCATCCAGCAGTGAACCTATAATTCCAAACACAGAAGAATCGATTTTTGGAAACGTCGATTTCACCTGCTCTACCTGCAAGGAATATTTAGATAATGTAGGTGATTTAATGAGTCATAACTGCACTAGAAAAGTTTCTCCAGAAGGAAGTGAAAGTGGTGGTTTACCAAGCTATGAAGATTCCATTCAAGCAAAAAAGAAGGTTAAAGGTGGTCGTAGAAATAAGAAGGGGAATAAAACCACCACAAATAAACTTGGCCTACAAACTGCAAATAACAAAGACAAAAAAACTGCAACCCCAAATATTTGTTCCTACTGTCAGAAAGGTTTTAAGAAGCATTCAGATTTGCTAAGACATGTTAGAACTCATACCGGAGAGAAACCCTTCAGTTGTGATAAGTGCCAAAAGACTTTTACACTCAAATCAACGTTAGAGACCCATCAGAGGACTCACAATCCAGAATCACATCAAAAATTTGATTGTGGAGTTTGTGGTACGAATGTTAGCTCTAAGGCGAGTTTGCGAGTTCACATGATGATGCACACCGGTGTAAAACCTTACCAGTGTTCCGTTTGCCTTGAAAGTTTTAGAACCACCGGTCACAGAAGATCTCACATGAGGACCCACTTAAATAACAACAAAGCAAGCAAGCAGTCAAAATCGGCCAAAGTAACTTCCATGCTGCAATCTGTTATCACAGAAACTCAAAACAATGAGGAAATGTATGAAgaggttttattattaaacaattctCAACCTTTCAAAGAAAATAAGGAACTCACTCTACATGACTCGGAGGTTCTCTTCCCCAATCAAACAGTTCAAGTGGATTCCTTAATTTTGCAGCAGTTACAAGAAAGCTGTGTTTTGTTAGAAGATGGAAACGAAAGAATGCCACCGTTTATTCAGGTTGATATTAATAACTTTGGAGAAATAACGAACGTCAAGTCGATTCGAGACATTCAGGAATCATTCAAAGCTGCTGAGCCAGATAAAAGCAGTGAAAGTACTTATATTACGAAAAATGTATCCCTTGAACGAAATTTTGAGTGTGATATTTGCCATAAAAAGTACACCACTAAATCTGTGCTTACAAAACATAAGAGAATACACAATAAGTTGCATTGTTCGAAGTGTAACATTAAATTTACTCAGACTGAAGAATTACAGGAACACTTGAAAATGCACAATGTAGATCGGCCCTTTGCTTGCTCGCTCTGTGACAATAGATTTAgtctcaaaaaaaatttaataacgcaTATGAAAAGGTGA
Protein Sequence: MKTIDEEIPTNSEGCEIYTYIAIPINSLKQGNDIIQSVEPMEIASNVLYNVLPHDITNEKIQTYTLTDQFIETLRANNQEHITGVIESQESLRPTVIEQISNTRKSVILQTNLNEDEASDYKCKSCNKVFKTRLSYQKHLKIHKEKPYKCYECSASYNYESNLKLHKIVHEDNVTQCPVCEKSFNRKASLKNHVTFHEIEETFTCSECLAEFDSEEEYNKHIQNHKSEAQLKSLQKSLTCSVCDQQFENRAKYKEHLSFHTEVKKLMKIKKTRKKQQVVKKIPSNSHVCDVCKKTFSKYCLLLRHKRTHTGEKPYACQYCDRAFAQKGTLDVHIKIHTGLKAYQCTICQAKFNQRCNLRAHVRRTHLHANISEKTYSCQLCACVFTRIASLNAHTTRYHRGDKESHDIMDLMQQIDQLENQMNNKSNLSLSEISRRNTIQNDSEKFVRLADSSVEGSIQYLRVKQKKTLEGLWYACSYCEKEFKKPSDLIRHIRIHTMQKPFKCKHCNRRFSLQSTLKKHVNDHANLRSYECTMCKKTFSSKSGLKNISRVNDKSAPPKLACGSCMSFVSEFKAKRINIEKLDTQKILNNLNIEIELKQPIVETPEGLVPIISPKSKIYLDSANSNKPKLHKCHCGSEFFRLKNFQQHMLTHTSEKKFKCSICPKCFHSSSKLKEHLNLVHNAERKFLCRICDKRFVSNSILKRHLITHSHIKPYICPYCKKRFRTVLHCRQHIKLHKKEVLLSTLAGPDANKFTASFVTETLPENLFANALPDGTYNLGLNFDNLTDSTDIPGGSNLLSEVSAGVEQNEGDSRTQILYTDKSSGVIVSTPLDISQAHQDGKSKLDQQLFLTSTALPSYDDSTKTITADNLENVNDSITNLPQENPTVFLNFDDLQLSTSNLYSSYQNLKNFDQLLGEISEIPDNNILLTSDSSLSQLTDSQLDSSNFDGLMPFAFNTNLSLNNVTLSSTNPFPNVILSNVGEDATDLNQAPLPNLPYDVKKGSGEEESEKMMETEQENPLLSNLLETSSSSEPIIPNTEESIFGNVDFTCSTCKEYLDNVGDLMSHNCTRKVSPEGSESGGLPSYEDSIQAKKKVKGGRRNKKGNKTTTNKLGLQTANNKDKKTATPNICSYCQKGFKKHSDLLRHVRTHTGEKPFSCDKCQKTFTLKSTLETHQRTHNPESHQKFDCGVCGTNVSSKASLRVHMMMHTGVKPYQCSVCLESFRTTGHRRSHMRTHLNNNKASKQSKSAKVTSMLQSVITETQNNEEMYEEVLLLNNSQPFKENKELTLHDSEVLFPNQTVQVDSLILQQLQESCVLLEDGNERMPPFIQVDINNFGEITNVKSIRDIQESFKAAEPDKSSESTYITKNVSLERNFECDICHKKYTTKSVLTKHKRIHNKLHCSKCNIKFTQTEELQEHLKMHNVDRPFACSLCDNRFSLKKNLITHMKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292030;
90% Identity: iTF_01292030;
80% Identity: -