Basic Information

Insect: Rhagonycha lutea
Gene Symbol: MBD-R2
Assembly: GCA_958510855.1
Location: OY294036.1:75516015-75525571[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.6e-15 1.4e-11 44.8 0.0 5 70 410 474 406 480 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.6e-15	1.4e-11	44.8	0.0	5	70	410	474	406	480	0.91

Sequence Information

Coding Sequence: ATGGGTCGTAAGTGTGCAGTTCCGGGTTGTTTATCAGAAGAAGGCCGCGACGAAGATCTAGGAGTAACGTTTCACAAGATTCCTCTGCATTCAGACATCAGGCCAAAGTGGATGTCATTGTGTCACATCCCTGAAGATAAACAGTTCATAAAAGTGGTTCACGTTTGCTCTAGGCACTTTTTGAAGGCAGATTTTTGTCAATTTAAAGGTAGAAAGTATATGTTACGACAGGGCGTGTTACCCACTGTCTTCCCGTggtcaaaattaaaaaaggaatcGTTGGTGGACGACGGTACTTCTACTGCAAATATTAAAGTCGAAGAATCTTCTAAAGAGGATAACGTAGAACAAGTTGTAAATAACGAACCCGCAAAGATGGACGTTGATATAAAAACGGAGGTTAGTGAAGAACCCGCAGAGTTTACCATGGACGAAACCATAATTGTAAAGGAAGAACTTGGGGTGGTAAAAGAAGAAGCAATAAATTTACCTAATACTGGTGACGTGGATGGCGTTAGAAATAAAAAACTAGTGGGACAATCGTCcacaataattgaacaaaaaggGAAAGCTATTCAAACGCCTTCGGgggttttaaattttgttataaacgAACGTTTGGAAGCTTTAGACGTGAAGCAAATGTGGTTTCCTGCACGCATCATTGAAATTGACTACGAAGACAATGAAGTGTTAATTCACTTTGAAAAATACTCTAATAAGTTTGACGAATGGATCAGCATGGACAGTTGTCGTTTACGGCCCATACAACCACCTTCTAAAAAGCAACCGtcggttgaaacttttgctgtTGGTGAAAAATGCATGGCATCGTGGAGCGATGCTAGAAAATTTCCTGCCACCGTCTCGAGAATTATCAATAAAGACACTTACGAGGTTCTCTTCAACGATGGCGTTGTAAAAGTGCTAAAATCTCATCGAATAGCAAAAGCTGATTCCAAAGTGATTGGTTCGGCCCCTTTATTTAAACCTGTGGAGGGTACAAAGCAGGATCGGCGTGATAAAAAGAGAAAGCTGAATGTGGCCAAATTGTTTCACAAACGAGTTCGCTACGATACAGATGAAGGCGTTTCAAATGTCGTGGGGGAAGAACGTATATCTAGTCCAATTGAAGAAACAGAAGGAGTTTATCCTAGaTGGGAAAATGGTCGACCAGTCGGTACAGAATCTGCTATCGAAACTAGTGATGGGGTACGAAAATCAATTGTTGTTGTCGATCCTCGTTTGCCACCGAATTGGCTCAAGCACCTAAGTCAGAGAATTCATGGCGCGTCTGCAGGAAAGTGGGATACATTTATAACAAATCCAGAAGGTCGTAAATTTCGGATTCGTTCAGAAGTTAAAACATACATTGAAGAAAACCCTCATCTGAATTTGAATGAGGCTATGTTCGATTTTGCATTGCATAGAAAACCCCGTGGCGCATCACGTCGTTCATTGCCAGCAGTTGATGCAGTTCCCCCCGAACCTATGGATGAAGAAGTAAATACCCATACAAGTTTGAAGATTATGATGGTCGGTAATGGTTTTGATTGTCCAATAGAAGGTTGCAGAAAACATTTCCGACGTGAAAATTTAGCTCAAATGCACGTCAAACATTATCACCCCGAGTACACAAAATTTCTTGATTCAACTCCGAATGTTGCCGATTTAGCGTACGCTAGAACCGTGGGCGAATCTTTAGATAAATCACCAGAGAGGAATCTAAAAAGTACTCCCGCCAGACAACCACAAAAATGTGCGACACCAAAAGTTGTTGCACCTAAAACTGTTATTTCATCACCATCGTTAGAAGTTAACACTATGGCAACTCAACAGCAATCCATAGATTCGCAAGCTTCTCagttacaaaaaacaaaagatAGTGAAATTTTGAAACTGTTGAATAGTAAGCCTATCGACGATAATAACACGCTTAAGTATCCCCCAGGTTTACCTTCTAACATGTACCCAGATATAAAACTCAAAGATTTACTGAATAAATCAGAAGGCATTCCCAAACGCGAAGATTTGAATCTCAAAAATTTGAGCACCATAAGACCTACTGGAATTAAGACTTTGTTACCAGTTGTTAGAAGTACCGAACCAAAAAAGGATGGAGACATTGAAAAAAATCCAAGCTTGGATAAAAAAAACTGCAGTAAGCAAAAGCGACAGTTATTGGAAAACGTCGAGTCCATCGTAAAACCGAAAGATGTCGTTGAAAGTACCTCAGTTGCGACCAATATACCAATTATATCTGAAACTAACTCTAATTACATTGTAGAAGGTGGAGAAGTTATAAAGATTGTTCAAATGAAAAGcgaagaaattattaactgtaCTTGTGGTATCACGGAAGAAGATGGGCTTATGATTCAATGCGAGGTATGTTTGTGTTGGCAGCATGCCTACTGTAACAATATTGAACGTGAAAATCAAGTGCCTGACAATTACATTTGTTACATTTGTCAAAACCCGGTAAGGCAACGTTcgtcaaaaaaatattatcacgATCAAGATTGGTTAAAAAATGGTACTTTACCTGTTGCCACTTATCATTGTAAAGACGAAGAGGCCCATAAAAAAAGATTCGAAGATTTGAAACTTTCACACGATTTATCAGGCAGATTGATCGAATTGAAAGATTTTATGAATTCGCTTAAAGTCAAAATGAAAATTGCCGAcGTCAAGAACCATCCTAAACTATATCTCTGGTCGAAACCTTGGGAAAAATTACCACTACCTGAAAAGGAAGATTTAATTGAAACAGAAGAAATAAAGCCAAAGTGTGATTTACCAGAAAACGAATTCAATAAGAGTGATATTGATTTATTGAGTACCAAATCTGAAGTTCAAAATGACTCCATGTTATTGTCACTTTTGAAATCCACTAAAGAAgaacaaaaattgaaagacGAGATCGATATCAACAATTTAATAGCTAATAATTTGGAGCAGTTGCCTATGGCTGGACCAATAATACCACAACCGGAAGCAGCAATCGATTCTGGCGATTGCAAGATAAATCTTTTGGAACATATTGCTCATAGTCAGACTTTGGTCGAAGAGAGACTTAACAATTTGGAAGAACAAATTGATACACTGGATTCAGATAATAACAATTCTGAACAAGACTATGCACGAACATGCGTAACCATTCAAATGCTGTTGAAGGATATGAATACGTTGAAAGAACTaagtcataataataatttataa
Protein Sequence: MGRKCAVPGCLSEEGRDEDLGVTFHKIPLHSDIRPKWMSLCHIPEDKQFIKVVHVCSRHFLKADFCQFKGRKYMLRQGVLPTVFPWSKLKKESLVDDGTSTANIKVEESSKEDNVEQVVNNEPAKMDVDIKTEVSEEPAEFTMDETIIVKEELGVVKEEAINLPNTGDVDGVRNKKLVGQSSTIIEQKGKAIQTPSGVLNFVINERLEALDVKQMWFPARIIEIDYEDNEVLIHFEKYSNKFDEWISMDSCRLRPIQPPSKKQPSVETFAVGEKCMASWSDARKFPATVSRIINKDTYEVLFNDGVVKVLKSHRIAKADSKVIGSAPLFKPVEGTKQDRRDKKRKLNVAKLFHKRVRYDTDEGVSNVVGEERISSPIEETEGVYPRWENGRPVGTESAIETSDGVRKSIVVVDPRLPPNWLKHLSQRIHGASAGKWDTFITNPEGRKFRIRSEVKTYIEENPHLNLNEAMFDFALHRKPRGASRRSLPAVDAVPPEPMDEEVNTHTSLKIMMVGNGFDCPIEGCRKHFRRENLAQMHVKHYHPEYTKFLDSTPNVADLAYARTVGESLDKSPERNLKSTPARQPQKCATPKVVAPKTVISSPSLEVNTMATQQQSIDSQASQLQKTKDSEILKLLNSKPIDDNNTLKYPPGLPSNMYPDIKLKDLLNKSEGIPKREDLNLKNLSTIRPTGIKTLLPVVRSTEPKKDGDIEKNPSLDKKNCSKQKRQLLENVESIVKPKDVVESTSVATNIPIISETNSNYIVEGGEVIKIVQMKSEEIINCTCGITEEDGLMIQCEVCLCWQHAYCNNIERENQVPDNYICYICQNPVRQRSSKKYYHDQDWLKNGTLPVATYHCKDEEAHKKRFEDLKLSHDLSGRLIELKDFMNSLKVKMKIADVKNHPKLYLWSKPWEKLPLPEKEDLIETEEIKPKCDLPENEFNKSDIDLLSTKSEVQNDSMLLSLLKSTKEEQKLKDEIDINNLIANNLEQLPMAGPIIPQPEAAIDSGDCKINLLEHIAHSQTLVEERLNNLEEQIDTLDSDNNNSEQDYARTCVTIQMLLKDMNTLKELSHNNNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00269804;
90% Identity: iTF_01291568;
80% Identity: iTF_01293785;