Rlut026970.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- tfip11
- Assembly
- GCA_958510855.1
- Location
- OY294040.1:42088243-42098445[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-89 2e-85 287.7 11.0 1 275 389 661 389 661 0.98 2 2 0.36 4.3e+03 -2.0 0.1 242 270 673 701 666 706 0.68
Sequence Information
- Coding Sequence
- ATGTCGGACAATGAATACGAAAAGTTCGAAATTACGGATTATGACCTCGAAAACGAATTCAATCCGAATCGGCCCCGGCGTAAATTCACCAAAAAGCAACAAATTTACGGTGTTTTTAACGACAGTGATGAAGAAGATGAGAGGCCGTCGTTTAAAAGTTCGAAGGCGCCGAAGAATTACTCCGCACCGATCGGTTTCGTTGCAGGTGGCGTGCAACAGGCTGGAAAGAAGCCGCTGAAGGAGGAGAAAGACGACGAGGAGGACGGTGAATCGATTGCAAACGAGAACTCCAGCGATTCTGAGAGCGATGTTAAACCACTCAGAAGGGGCTTTGGGGCTCAAAAAACCACATCACAGTCAACGGTTACGGAAATCGCTGGCGATATTGCGGGTCTTCGGAAGGCGAATAGTGGAACCAACACGACTTTAATGCGAAAGGGGATCGGGAATTGGGAGAAACACACCAAAGGATTCGGTGCTAAGCTTCTCCTTAAAATGGGGTACCAACCTGGGAAAGGGTTGGGGAAGGATCTTCAGGGTATCCAAGCGCCAGTTGAAGCGCATCTTAGGAAAGGGAGGGGCGCGATTGGTGCGTACGGACCAGAAAAGGCGGCCAGTTTGGCCAAAATTAAGGAGAGTGGTAGAGACGAATTTGATGATGATGTGGAAGTGAAAGGCGAATCGAAATGGAAGAAGAATGACGTCAAAAAGAAGAACCGATATTATTACAGGACGGTGGACGACGTAATCGAGAAGGGGAAGAGGCCAGGGTTTTTAAACGGTGGTCCTACCAGCGAATTGAGTAAAGTGAAAGTAATTGATATGACCGGGCCACAGCAACGCGTGCTGAGTGGTTATCACGCTTTAAGTGGTTTAAAAGCGCCTCCAGGGGTGGAACACTTCGAAGACGTTGTTCATAAGAAGTGCTCAAACTTTGCTTTGCCCGAAATCCAACACAATTTGGATCTTTTAGTGAGCATCTGCGAACAGGACATAATCAGCACTGATCGGAGCACCCGATACTGTCAAGACAGGGAAGTAACCTTGAAACAAGAAGAAATTACGGTGACCAAAGTTTTGGAAGAAGAAAACATTGAAATTGAAAGCCTTTCCAGTATTCTCGAACAAGTGAAGAAGTTAATCGATCCAACCCAAGTTTTGTCACTTGGACAGTTCGCACACATATTTACAGAGCTGCAGGAAACTTATCCGAACGATTATCACGTTTATCGGTTATCCGAACTGGCGCCCGGGTTGGTCGGACCTTTAATAACGTCGGCACTGGCAAGTTGGTCGCCCTTATCAGCGCCGCGACAATACGTTGACGTTTTTCTGCAATGGAAGGATATCTTGGAAAAGCCCCAACAACGTGGGACTATAGAAGGTAATTGTATGGGAATTCAGCCGTATGATAGTCTCGTATGGCACACTTGGGTGCCTGTATTGAGATCTTGCGTTAGCACTTGGAATGTCCGTCATGCTAATGATCCATTAATTACACTGTTGGAGACATGGAAACCGGCACTACCTCACTGGATTTTAGAAAATGTTTTGGACCAATTGATAATGCCCAGATTAGGCGCAGAAGTGAATAATTGGAATCCTGTCATGGACACATTACCAATCCACTATTGGATCCATCCATGGATACCAATGCTAGATTCGAGGTTAAAAACGTCGATTTATCcaataataatggaaaaaatAGGATCTGCACTGACAAACTGGCATCCTACCGATAGTTCTGCTCTCTCAACTCTAACACCATGGAAAGAAGCGCTGCCCAGTGGTTCCTTTacagtttttatattgaaacatATCGTACCCAAGTTGCAGCTATGTATGGAATCTTTGGTCATTGCTCCCCACAAACAACACCTGGAATCCTGGAACGCGATCATGGCTTGGAAAGACATGTTATCCGTCGTAAACTTAGCCCTAATTTTACAACAGTATTTCTTCCCACGTTGGTTAAAAACGCTGGCAATGTGGTTGAACAATAAACCAGATTACAACGAAATTACGGAATGGTATTCAGGATGGAAGAGGCTGATACCTAAAGAAGTGTTAATGCAACCAAGCATCAAAGATAATTTTAATCAGGCACTTGAAATGATGAACAGTGCAGTCAACACCGAATCCCAACCTCAACCAGGTGCTAGAGAATCCGTTTCCTACCTCACTAACATAGAAACAAACGCACCACCTCCCCCACCACCGAGCACAGAAATGCTGCCCGACATAATACACAGATCATATCAAAAACACCGAGGCGTTAAAGAAATAATTGGTAGGCACTGCGAAAGGAACGGAATTTTATTTGCGCCCatcaacaataaattttatgaagGCAAGCAAGTTTACCGTGTGGGTTCGAATGGAATTCAAGTCTATTTCGATCAACATGTAATTTTTTACTCACAAAATAACTCTTCATGGCTACCGATCTCAAAAGATAGAATATTAGATAAAGTGGCTTAA
- Protein Sequence
- MSDNEYEKFEITDYDLENEFNPNRPRRKFTKKQQIYGVFNDSDEEDERPSFKSSKAPKNYSAPIGFVAGGVQQAGKKPLKEEKDDEEDGESIANENSSDSESDVKPLRRGFGAQKTTSQSTVTEIAGDIAGLRKANSGTNTTLMRKGIGNWEKHTKGFGAKLLLKMGYQPGKGLGKDLQGIQAPVEAHLRKGRGAIGAYGPEKAASLAKIKESGRDEFDDDVEVKGESKWKKNDVKKKNRYYYRTVDDVIEKGKRPGFLNGGPTSELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFALPEIQHNLDLLVSICEQDIISTDRSTRYCQDREVTLKQEEITVTKVLEEENIEIESLSSILEQVKKLIDPTQVLSLGQFAHIFTELQETYPNDYHVYRLSELAPGLVGPLITSALASWSPLSAPRQYVDVFLQWKDILEKPQQRGTIEGNCMGIQPYDSLVWHTWVPVLRSCVSTWNVRHANDPLITLLETWKPALPHWILENVLDQLIMPRLGAEVNNWNPVMDTLPIHYWIHPWIPMLDSRLKTSIYPIIMEKIGSALTNWHPTDSSALSTLTPWKEALPSGSFTVFILKHIVPKLQLCMESLVIAPHKQHLESWNAIMAWKDMLSVVNLALILQQYFFPRWLKTLAMWLNNKPDYNEITEWYSGWKRLIPKEVLMQPSIKDNFNQALEMMNSAVNTESQPQPGARESVSYLTNIETNAPPPPPPSTEMLPDIIHRSYQKHRGVKEIIGRHCERNGILFAPINNKFYEGKQVYRVGSNGIQVYFDQHVIFYSQNNSSWLPISKDRILDKVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268263;
- 90% Identity
- iTF_01291564;
- 80% Identity
- -