Rful008495.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7024527-7030655[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 2e+03 -0.1 0.0 23 53 92 122 88 123 0.75 2 13 0.93 4.2e+02 2.0 0.1 21 48 118 145 114 151 0.78 3 13 6.3 2.8e+03 -0.6 0.0 21 45 146 170 134 177 0.76 4 13 0.00046 0.21 12.6 0.2 23 52 176 205 170 207 0.85 5 13 0.02 8.8 7.4 0.8 21 53 202 234 198 235 0.84 6 13 0.076 35 5.5 0.5 21 46 230 253 226 255 0.84 7 13 0.00037 0.17 12.9 0.2 21 52 256 287 254 289 0.83 8 13 0.47 2.1e+02 3.0 0.3 21 46 284 309 280 312 0.80 9 13 0.0038 1.7 9.7 0.1 20 52 312 344 305 346 0.85 10 13 4.6 2.1e+03 -0.2 0.0 21 47 341 367 339 374 0.73 11 13 8 3.6e+03 -1.0 0.0 21 44 369 392 357 400 0.71 12 13 0.037 17 6.5 0.8 23 44 399 418 393 422 0.81 13 13 0.14 62 4.7 0.3 21 45 423 447 419 450 0.79
Sequence Information
- Coding Sequence
- ATGTTACAAATGGATGACGAAAGTTTAACTCCGATCAAGTTAGAAATGAGATCGGCTGAAGAGGAGAGATGTCTCAAGGACCAAAATACAACTTTTGAACCAGGAACGATTATCAGCGAAACTCGATGCCATTCAAATAGTTATCCTCAAATCGAGATGGAAGAAGAAATGGAATTTAAGTTGGAAGATTTGCATCATTCTATTGACATCAAAGATGAACCTTCAATTTTAGAATTTCAACCGGAGGAAGACAACGAACCAAATACCGGCCAGAAACCGTTTGCGTGTCGACGATGTGACTATAAAGGTAAAGATAAGGTATCACTAAAACGCCATTTGAAAACTCACACCGGCGAGAAACCGCATGTGTGTGAAATATGTGACTACAAATGTACGGAAAAAGGTACTTTAACACAGCATTTAAGAATTCACACCGGGGAGAAACCCTTTTCGTGTGAATTATGTGACCATAAATGTGCACGTAAAGACAGTTTACAAATCCATTTAAAAACTCATACTGGCGTGAAACCTCTTACGTGTGAAATATGTGACTATAAATGTCTGCAAAAAAAAAATTTAAAAAGGCATATGAGAACTCACACCGGCGAGAAACCGCATGTGTGTGATATTTGTAACTACAAATGTGCAGAAAGGTCAAGTTTAAAAAGGCATTTGCGAGTACACGCCGGTGAGAAACCGCATGTGTGTGTAATATGTAACTATAAATGTACAGATAATTTAAAACGCCATTTGAAAATTCACACTGGCGAGAAACCGTTTACGTGTGAAATATGTGACTACAAATGTATACAAAAACGAGATCTAAGAAGTCATATGAGAACTCACACCGGCGAGAAACCGCATGTGTGTGTTATTTGTGACTACAAATGTGCAGAAAGGTCAAGTTTAAAAAAGCATTTGAGAATACACACTGGTGGTGAGAAACCGCATGTGTGTGTAATATGCGACTATAAATGTACATATAAGGGAAATTTAAAACGCCATTTGAAAATTCACACCGGCGAGAAACCATTTACGTGTGAAAAATGTGACTACAAATGTACGGTAAAAGGTACTTTAACACAGCATTTAAAAATTCACACTGGGGAGAAACCTTTTGCGTGTGAATTATGTGACTATAAATCTGCACGTAAAGCCGGTTTACAAATTCATTTAAAAACTCATACTGGCGTGAAACCTTTTACGTGTGAAATATGCGACTACAAATGTATACAAAATCTAAGAAGGCATATGAGAACTCACACCGGCGAGCAACCGCATGTGTGTGATATTTGTGACTACAAATGTGGAGAAAGGTCAAGTTTGAAACAGCATTTGAGAGTACACACCGGTGAGTAA
- Protein Sequence
- MLQMDDESLTPIKLEMRSAEEERCLKDQNTTFEPGTIISETRCHSNSYPQIEMEEEMEFKLEDLHHSIDIKDEPSILEFQPEEDNEPNTGQKPFACRRCDYKGKDKVSLKRHLKTHTGEKPHVCEICDYKCTEKGTLTQHLRIHTGEKPFSCELCDHKCARKDSLQIHLKTHTGVKPLTCEICDYKCLQKKNLKRHMRTHTGEKPHVCDICNYKCAERSSLKRHLRVHAGEKPHVCVICNYKCTDNLKRHLKIHTGEKPFTCEICDYKCIQKRDLRSHMRTHTGEKPHVCVICDYKCAERSSLKKHLRIHTGGEKPHVCVICDYKCTYKGNLKRHLKIHTGEKPFTCEKCDYKCTVKGTLTQHLKIHTGEKPFACELCDYKSARKAGLQIHLKTHTGVKPFTCEICDYKCIQNLRRHMRTHTGEQPHVCDICDYKCGERSSLKQHLRVHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292340;
- 90% Identity
- iTF_01292340;
- 80% Identity
- iTF_01292340;