Rful009984.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7255745-7259320[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.1 4.1e+03 -1.2 0.0 26 46 111 131 108 135 0.86 2 10 0.083 37 5.4 0.1 21 44 134 157 130 166 0.84 3 10 0.14 64 4.6 0.1 23 45 164 186 159 189 0.87 4 10 0.03 14 6.8 0.0 20 49 189 218 186 221 0.85 5 10 0.0073 3.3 8.8 0.1 21 52 218 249 215 250 0.88 6 10 0.39 1.8e+02 3.2 0.1 21 46 246 271 243 276 0.86 7 10 0.021 9.4 7.3 0.4 21 52 274 305 270 307 0.81 8 10 0.4 1.8e+02 3.2 0.1 22 49 303 330 300 333 0.75 9 10 0.0021 0.93 10.5 0.0 21 47 330 356 325 362 0.85 10 10 2.1 9.5e+02 0.9 0.4 21 44 358 381 356 384 0.81
Sequence Information
- Coding Sequence
- ATGGAAGAAGCTATCGATGGTTGTTCGCGAGCTCCCGGTAATGATCATAAAATTACTACAAACGAAATGGAGGCCATGGATGCTGAATTAGAAGAATTGCACCACTCCATTGATATTAAGGATGAAGAGGATTCCTATTTAGAATATGAAGTAGGTAGTAATGAGGGCCCTTCATCGCATTCGAGTAGCTTCTTTCAAATTAAAACGGAAGAAGTAGAATTGAAGTTGGAAGATCTGCATAATCATTCCATCAACATTCAAGCAGAGACGTCTGTTCATCTTCAGGAAACAAAAACAAATGATAGAAAAATTGGTCACTGTAAGTCGTTTAAATGTGAAATTTGTGACTACAAATGTGAACAAAAGAAAAGTTTTAAAATTCATTTAAAAATTCATAAAGAAGAGCAGCTGTTTTATTGTGAACTTTGTGATTATAAATGTGTTCAGAAGGCAAATTTAAAAAGGCATTTAATAGGTCACACAGATAAGAAACCATTTCGATGTGAAATTTGCCATTACAAATGTGGACGTAAGGATAATTTCAAACGTCATTTAAAAACTCATACGAGCGAAAAACCATTTCAGTGTGAAATTTGTGGCTACAAATGTGCAGAAAAAGGAAATTTAAAAATTCATTTAAAAATCCATTCCGATGAAAAACCGTTTCATTGTGAAATTTGTGACTATAAATGTACTCAAAAGGAAAATCTAAAGATTCATTTAAAAATTCATACGGGCGAGAAACCGTATCATTGTGAAATTTGTGACTACAAATGTGCACTGAAGGGAAATTTAAAAAGTCATTTAAAAATTCACACAAGCGAAAAATTGTTTCAGTGTGAAATTTGTAACTATAAATGTGCACGGAAGGAAAATTTAAAAAGGCACTTAATAGTTCATACAAATAAAAAACCGTTTCTTTGTGAAATTTGTGACTACAAATGTGCACGTAAGGATAATTTAAAAAGTCATCTAAAAAATCATACAAGCGTAAAACCGTTTCGGTGTGAAATTTGTGATCACAGATTTGGACAGGCGAGAAATTTAAAAATTCATTTAAAAACGCATACGGGGGAAAAACCGTTTCAATGTCAAATATGTGACCATAAGTGTGCACGTAAGCAACATTTAAAAATTCATTTGAGAACTCATACAGGCTAA
- Protein Sequence
- MEEAIDGCSRAPGNDHKITTNEMEAMDAELEELHHSIDIKDEEDSYLEYEVGSNEGPSSHSSSFFQIKTEEVELKLEDLHNHSINIQAETSVHLQETKTNDRKIGHCKSFKCEICDYKCEQKKSFKIHLKIHKEEQLFYCELCDYKCVQKANLKRHLIGHTDKKPFRCEICHYKCGRKDNFKRHLKTHTSEKPFQCEICGYKCAEKGNLKIHLKIHSDEKPFHCEICDYKCTQKENLKIHLKIHTGEKPYHCEICDYKCALKGNLKSHLKIHTSEKLFQCEICNYKCARKENLKRHLIVHTNKKPFLCEICDYKCARKDNLKSHLKNHTSVKPFRCEICDHRFGQARNLKIHLKTHTGEKPFQCQICDHKCARKQHLKIHLRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292343;
- 90% Identity
- iTF_01292343;
- 80% Identity
- iTF_01292343;