Rful011324.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:8760555-8761884[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.045 20 6.2 0.0 21 45 129 153 120 159 0.83 2 7 0.6 2.7e+02 2.6 0.1 26 47 190 211 184 216 0.83 3 7 0.31 1.4e+02 3.5 0.1 21 46 213 238 209 244 0.82 4 7 0.12 56 4.8 0.1 21 44 241 264 237 268 0.70 5 7 0.0084 3.8 8.6 0.1 21 47 269 295 261 302 0.88 6 7 0.45 2e+02 3.0 0.0 22 46 354 378 350 380 0.88 7 7 0.085 38 5.3 0.0 21 44 381 404 378 407 0.91
Sequence Information
- Coding Sequence
- ATGCAACATCCTAGCGATCTGGCTAAATCGCTACCCTCGGAAGACTTACAAATTATGAAAAACGCTGGAGATGTTCTAGAAAATCCATATAATTTAAGTAACGGTTACGGAATTAAAACTGAAGAATTGGAAGATGTGAAATTTAATGCGGAAGATTTGCATCATTCGATTGATCTTAAGGAAGAGAGTGAGAAAGATCAATTAGATCAGGAGGGCGCTGTCAAAAATGAGTTAAATTTATTCGATTATGCAATTTGTGCATATAAAGAAGAATTGGAAGTGGATTTAAAGAGTCTTACCAATCCAAAACTATTTAGGTGTAAATTTTGTGACTACGAATGTACAAAAAGATCTATTTTGCGGATTCATTTGAAAATTCATACCGGCGAGAAACCATTTGCTTGTGAATTGTGTGACTATAAATGCATCCAAAAATCAAATTTAAAAAAACACATGAAAACTCACACTGGTGAGAAATTATTTGTGTGTGAATTTTGCGAATATAAGTGTTGCTATAAGGCGAATTTGAACAATCATATCAAAATTCACACCGGGCAAAAAGAATTTGTTTGTGCAATTTGTGGTTATAAATGTGCCCAAAAAGGTAATTTACAATCGCATTTAAAAACCCACTCCGGGGAAAAACCGTTTGCTTGTGATATTTGTGATTATCGGTGCGCATATAAAATAAATTTGAAAGTGCATTTAAACAGTCACACGGGCGAGAAGCCGTTTACTTGTGATATTTGTGAATTTAAGTGTGCACGTAAATCCCATTTAAAGGTACACTTAAGAACCCACACCGGGGAAAAACCTTTTGGGTGTGAAATATGCGACTATAAGTGTGCACAAAGCTCGCTTTTAAAACGGCATGCAAAATTGCACACCGAAGAGAAATCATTTGCTTGTGAGTTATGTGACTATAAATGCGTATATAAACCACATTTAACCACTCACTTAAAAACTCACACCGACGAGGAGCCTCTTGTTTGTAAATTTTGTAACTCTAAATATTATTATAAATCAAGTTTGAACAACCATTTGAAAACTCACACTGGACATAAGCCATTCACTTGTGTAACTTGTGGTTATAAAAGTACCCAAAAAGGTCACTTACACAGACATTTAAAGATTCACGTCTCCGAGAAGCCTTTCGCTTGTGAGGTCTGTGATTATAAATGTGCGGACACTTCGAATTTTAAAAGGCACGTAAAATCCCACACTGAATAG
- Protein Sequence
- MQHPSDLAKSLPSEDLQIMKNAGDVLENPYNLSNGYGIKTEELEDVKFNAEDLHHSIDLKEESEKDQLDQEGAVKNELNLFDYAICAYKEELEVDLKSLTNPKLFRCKFCDYECTKRSILRIHLKIHTGEKPFACELCDYKCIQKSNLKKHMKTHTGEKLFVCEFCEYKCCYKANLNNHIKIHTGQKEFVCAICGYKCAQKGNLQSHLKTHSGEKPFACDICDYRCAYKINLKVHLNSHTGEKPFTCDICEFKCARKSHLKVHLRTHTGEKPFGCEICDYKCAQSSLLKRHAKLHTEEKSFACELCDYKCVYKPHLTTHLKTHTDEEPLVCKFCNSKYYYKSSLNNHLKTHTGHKPFTCVTCGYKSTQKGHLHRHLKIHVSEKPFACEVCDYKCADTSNFKRHVKSHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292425;
- 90% Identity
- iTF_01292425;
- 80% Identity
- iTF_01292425;