Rful005440.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7005630-7006751[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.27 1.2e+02 3.7 1.3 14 52 56 94 52 96 0.80 2 9 0.12 54 4.9 0.0 21 45 91 115 88 122 0.78 3 9 0.092 42 5.2 0.1 21 47 119 145 115 152 0.81 4 9 0.0081 3.6 8.6 0.1 21 48 175 202 167 207 0.77 5 9 2.2 1e+03 0.8 0.3 22 43 204 225 200 229 0.68 6 9 0.0037 1.7 9.7 0.0 21 51 231 261 227 262 0.82 7 9 0.0078 3.5 8.7 0.2 21 45 259 283 257 291 0.88 8 9 0.025 11 7.0 0.1 21 45 315 339 311 346 0.88 9 9 0.091 41 5.2 0.2 24 45 346 367 342 370 0.89
Sequence Information
- Coding Sequence
- ATGGAAAGCATTAACAACATTTTGGAGTCTCCGTATAAATCAACGTGCAGAGTGGAAGTTAAAACGGAGGAATCTGAAGACATAAAATTTAATATAGAAGAATTACATCATTCGATAGATATTAAGGAGGAAGACAGAGATGGAACAGCATTGATAGAGAAGAAATCTCCAAAAAGTGCTAGTATTCGAGAGAAAGTGTGTCAATGTCAAGTTTGTGGTTATAAATGTGCACACAGATCACATTTAAAGGAACATTTAAAAATTCACACCGGGGAGAAACCGTTCGTTTGTGATATTTGTGATTATAAATGTGCAAGAAAATCAAATTTGAAAGATCATTTCAAAACCCATTCAGGTGAGAAACCGTTTTTTTGTGAGATTTGTGACTATAAATGTGCATCAAATTCAACGTTAAAAAGACATTTAAATACTCACACAGGTCTCAAACCGTTCCCTTGTAAAATTTGTAACTATGAGTGTGCATATAAGTCTAGTTTAAAAGTACATTTAAAAACTCACTCGGGCGAGAAACCGTTCGCATGTTCGATTTGTGATTATAAATGTATACAAAAATCAAATTTAAATGATCATTTAAAAACGCACACCCGCGAAAAACCATTTTCATGTGAAATTTGTGACTATAAATGTGCACTCAGACACCATTTAAAATCGCATTTAAAAACTCACACAACCGAAAAACCCTATACTTGTGAGATCTGTGAATATAAGTTAACACATAAATCGTCTTTAAGAGATCATTTAAAAATTCACACTGGCGAGAAACCTTTCGCTTGCGAGATTTGCGACTATAAATGTGTCAGAAAATCAGCTTTAAAACGACATTTAAGTACCCACACCGGCGAAAAACGCTTTTCTTGCGTTATTTGTGACTATAAATGTGCCTATAAGTCAAGTTTAAAGGTCCATTTTAAAACTCACACAGGTGAGAAACCCTACGCTTGTGAGATTTGTGACCATAAATCAATACAAAAATCAGCTTTAAAACGACATTTAACAACTCACACCGGGGTGACACCGTTTGCTTGTGCGATTTGTAACTATAAATGTACTCAAAAATCATTTTTACGAAAACATTTAAAAACACATAGAGGAGATTTGTGA
- Protein Sequence
- MESINNILESPYKSTCRVEVKTEESEDIKFNIEELHHSIDIKEEDRDGTALIEKKSPKSASIREKVCQCQVCGYKCAHRSHLKEHLKIHTGEKPFVCDICDYKCARKSNLKDHFKTHSGEKPFFCEICDYKCASNSTLKRHLNTHTGLKPFPCKICNYECAYKSSLKVHLKTHSGEKPFACSICDYKCIQKSNLNDHLKTHTREKPFSCEICDYKCALRHHLKSHLKTHTTEKPYTCEICEYKLTHKSSLRDHLKIHTGEKPFACEICDYKCVRKSALKRHLSTHTGEKRFSCVICDYKCAYKSSLKVHFKTHTGEKPYACEICDHKSIQKSALKRHLTTHTGVTPFACAICNYKCTQKSFLRKHLKTHRGDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292285;
- 90% Identity
- iTF_01292285;
- 80% Identity
- iTF_01292285;