Rful006236.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:12544207-12545301[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.31 1.4e+02 3.5 0.1 22 52 110 140 103 142 0.91 2 7 0.0022 0.99 10.4 0.0 20 52 164 196 156 197 0.89 3 7 1.3 5.8e+02 1.6 0.0 23 45 195 217 192 226 0.84 4 7 0.0036 1.6 9.8 0.0 21 47 250 276 242 281 0.85 5 7 0.29 1.3e+02 3.6 0.0 21 52 278 309 273 311 0.89 6 7 0.94 4.2e+02 2.0 0.1 21 44 306 329 302 339 0.73 7 7 6.1 2.8e+03 -0.6 0.0 21 37 334 351 330 360 0.78
Sequence Information
- Coding Sequence
- ATGGAAAACTCTCATTTTATTGACTTCAACGATGACACTTCAAATTTTGACATTGAAGAATCGAATGGTTTAATATGCCCACTTTTTGAATGTGGGGTGTGCAAAGCAGAATTTATTACAATCGCACAACTCAAAAAACATGCAAAAATTCATGGTGATCCAAAGTTATTCGAGTGCAAAGTCTGTGACTATAAAGATTCCAACAAAGACACTTTTAAAGTTCATTTAAGAGTACATAAGGGTGAGAAATCCTTTTCATGTGAAGTTTGTGGTTTGCAATTTTCTAAAGAAAATAAGTTAAATGTTCATGTCAGAATCCATACTGGCCAGAAACCATTTATATGTGAAACCTGTGGTTCGAAATTTAGAGAAAAATCGCAGTTGAAAGGTCACCGTGTAAGGATTCATTTCGAGAAACCGTTCCTATGCGAATTTTGTGGCTATAAATGTTCATCAGAGGCGGAATGTAAAATTCACCTGAGAAGCCACACCGGGGAAAAACCATTCACATGTGAAGTTTGTGGTTCGACATTTTCTCAAAAAAAGATTTTGAACGTTCATATGAGGATTCATACGGGCGCGAAACCATTTGAATGTGAAACGTGCGGTTCGAAATTTAGGCAAAAATCAGCTTTACAAGTTCATCTCTTCGATGTCCATTCGAACAATAAACCGTTCGAGTGTGCAATTTGTGGCCGTAAGTTTCTCAAAAACGCGTACTTAAAAGATCATTTATTAAGTCATACCGGGGAAAAACCCTTTACATGTGAGATATGCAGTTCAGTATTTTCACGAAAAAAAGCTTTAAAAGTTCACTCAAAAATTCACACTGGCGAAAAACCATTTTCGTGCGAAACTTGTGGGTCGAAATTTTCTCAAAAATTTCGTTTAAAAGTTCATCTGCAGATTCATACGGGCGAAAAGCCTTTTGTTTGTGAAATTTGCGGTCATAAATGTATAAGAAAAGGAGATTTAAAAGATCATTTAATGGCTCATACCGGGGAAAAACCCTTCGCCTGCGAATTTTGCGATTTTAAGTCTATACGAAAATCTGTTTTAAAAGTGCATATAAAAGCTCATGATTTATCTGCCTAA
- Protein Sequence
- MENSHFIDFNDDTSNFDIEESNGLICPLFECGVCKAEFITIAQLKKHAKIHGDPKLFECKVCDYKDSNKDTFKVHLRVHKGEKSFSCEVCGLQFSKENKLNVHVRIHTGQKPFICETCGSKFREKSQLKGHRVRIHFEKPFLCEFCGYKCSSEAECKIHLRSHTGEKPFTCEVCGSTFSQKKILNVHMRIHTGAKPFECETCGSKFRQKSALQVHLFDVHSNNKPFECAICGRKFLKNAYLKDHLLSHTGEKPFTCEICSSVFSRKKALKVHSKIHTGEKPFSCETCGSKFSQKFRLKVHLQIHTGEKPFVCEICGHKCIRKGDLKDHLMAHTGEKPFACEFCDFKSIRKSVLKVHIKAHDLSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292286;
- 90% Identity
- iTF_01292286;
- 80% Identity
- iTF_01292286;