Rful017317.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996559.1:25237241-25238449[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7 2.1e+03 -0.2 0.1 23 45 53 75 49 82 0.64 2 10 0.69 3.1e+02 2.4 1.3 21 46 79 104 71 110 0.75 3 10 0.072 32 5.6 0.0 21 46 107 132 103 138 0.83 4 10 0.97 4.4e+02 2.0 0.3 21 44 135 158 131 162 0.83 5 10 0.0006 0.27 12.2 0.1 21 47 163 189 151 196 0.86 6 10 0.1 47 5.1 0.2 21 43 219 241 208 247 0.85 7 10 1.4 6.2e+02 1.5 0.1 21 44 288 311 281 315 0.80 8 10 0.0057 2.6 9.1 0.1 21 45 316 340 306 343 0.89 9 10 0.12 55 4.8 0.2 21 44 344 367 340 372 0.81 10 10 0.017 7.6 7.6 0.3 21 45 372 396 368 400 0.91
Sequence Information
- Coding Sequence
- ATGAATGTCTTGCAGGAAGCTCCTTCTAATATTGACAGCCAAATAAAGATAGAAGAAATGGAATTCAAGTTGGAAGATCTGCATCATACAATTGATATTAAAGAAGAGACTTCACTTCTAGGAGGTCAGCTGGAGTCCAAACCAGAAATTAACAGGAAGCCATTTTCATGTGTAATTTGTGATTTTAAATGTTCACGTAACGACACTTTAAAAATTCATTTAAGAACTCATACTGGCGAAAAGCCTTATAGGTGTACATTTTGTGATTATTCATGTGCACGTAGAGAACATTTAAAAAGACATTTAAGAACGCATTCTGGCGAGAAGCCGTTTAGTTGTAATATCTGTGAATATAAATTCTCACACAAAGAAAATCTAAAAGTTCATTTAAGAACTCACACCGGTGAGAAGCCGTTTTTGTGTAAAATTTGTAATTATAAATGTAAAGCGAAGGCACGGTTAAGAATGCATATCAGAACTCATACAGGCGAGAAACCGTTCACATGTGATATTTGTTACTACCAATTTGCTCATAAATCAAATTTAAACGTTCATCTACGAACACATACCGGAGAAAAACCATTTTCTTGTGAATTTTGTGACTATAAATGTTCGGAAAAGGCAACTTTAACAATCCATTTAAGAACTCATAGCGGTGAAAAACCGTTTTCTTGCAAAATTTGTGATTATAAATGTGCACAGAAGACGCACTTACACAGACACGAAAGAACTCATGTTACTGGTGATGAACTAATCAGCTCGTCCGAAAAACGTACTGCTGAGAAACGGTTCATATGCAACTTTTGTGAGTATAAATGTGCAGTTAAAAGGAGGTTCGAACTTCACTTAAGAACTCATACTGGAGAGAAACCATTTTCGTGTAAAATTTGCGACCGTAAATTTGCGCATAAAACAACGTTACAAAATCATCTAAGAACCCATACCGGCGAGAAACCGTTCACATGTGATATTTGTGACTACAGATCTGCACAAAAGGAAAATTTAAAAATTCATCTCAGAACTCATACTGGCGAGAAACCTTTTACATGTGAAAGTTGTGATTATACCTGTACACGGAAAGAACATTTAAAGCGGCATTTAATAACTCACACAGGCGAAAAACCGTACTCCTGTAAAATTTGTGACCATAAATGTGCACAAAGAGGACATTTGAAAAGGCATTTAAAAACTCACACTGTCGGAGAGTAA
- Protein Sequence
- MNVLQEAPSNIDSQIKIEEMEFKLEDLHHTIDIKEETSLLGGQLESKPEINRKPFSCVICDFKCSRNDTLKIHLRTHTGEKPYRCTFCDYSCARREHLKRHLRTHSGEKPFSCNICEYKFSHKENLKVHLRTHTGEKPFLCKICNYKCKAKARLRMHIRTHTGEKPFTCDICYYQFAHKSNLNVHLRTHTGEKPFSCEFCDYKCSEKATLTIHLRTHSGEKPFSCKICDYKCAQKTHLHRHERTHVTGDELISSSEKRTAEKRFICNFCEYKCAVKRRFELHLRTHTGEKPFSCKICDRKFAHKTTLQNHLRTHTGEKPFTCDICDYRSAQKENLKIHLRTHTGEKPFTCESCDYTCTRKEHLKRHLITHTGEKPYSCKICDHKCAQRGHLKRHLKTHTVGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292184;
- 90% Identity
- iTF_01292184;
- 80% Identity
- iTF_01292184;