Rful001062.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996560.1:5043945-5045144[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.2 1e+03 0.8 0.0 19 35 26 42 22 58 0.69 2 5 6.9 3.1e+03 -0.8 0.0 26 43 88 105 84 115 0.85 3 5 0.015 6.9 7.7 0.0 26 45 116 135 110 139 0.91 4 5 2.4 1.1e+03 0.7 0.1 22 43 140 161 137 171 0.84 5 5 1.5e-05 0.007 17.3 0.1 26 51 172 197 166 200 0.84
Sequence Information
- Coding Sequence
- ATGCAAGAAAATGAAGATTTGAATTCGATGATTTTGAGAAATTCATTACACGATCATAATTACTTCAAAAGAACTTCTTCTTCTTCATTTAAACATACGTGTAACATTTGTGACAAAAGTTTTTCTTCAAATACTTTTTTACAAGAACATGAAAAATTGCATACGAAGCAATCGTTTAGGTGCCAGTTGTGTGAAAAACTCTTTTCGTTCAAGAGCAGTTTATGGCAGCATATCATGACTCATACGGGCAAGAAACGTTTCCAATGTTCGTTGTGCAACAAAAAATTTTTTCAGAAAACTAATCTCGATAAACATCGTTTAATTCATGACAACATAAGATTATTTAATTGTGAATTGTGTTATAAATCCTTTACGCAAGAGGTTAATCTTCAGAAACACTTGGTTTTTCATTCTGGCAATCAATCGTACAGTTGTTCTTACTGCAAAAGAAAATTTGCTCAAAAGGCAAATTTAACTAAGCATGAACAAACTCACAAAGATGTAAGAAATTATGTTTGTACGATTTGTTATAAAGCATTTTCGCAGTCAAATAATTTAAAGCGACATGAAGCACTACATTTAGGAGAGAAGCCTTATATTTGTGTACATTGTGGGAAGTCTTACGTTCAAAAAGTTAGTTTGGTAAAACATGAAAGTCGATGCAATTTGTCCAATTTGGTTTTGAATGCTGAAAAGGTTGACGAAGGCTGA
- Protein Sequence
- MQENEDLNSMILRNSLHDHNYFKRTSSSSFKHTCNICDKSFSSNTFLQEHEKLHTKQSFRCQLCEKLFSFKSSLWQHIMTHTGKKRFQCSLCNKKFFQKTNLDKHRLIHDNIRLFNCELCYKSFTQEVNLQKHLVFHSGNQSYSCSYCKRKFAQKANLTKHEQTHKDVRNYVCTICYKAFSQSNNLKRHEALHLGEKPYICVHCGKSYVQKVSLVKHESRCNLSNLVLNAEKVDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01291993; iTF_01292511;
- 90% Identity
- iTF_01291993; iTF_01292511;
- 80% Identity
- iTF_01291993; iTF_01292511;