Rful011871.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7394618-7400363[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 8.8e+02 1.0 0.0 27 47 142 162 138 167 0.79 2 10 0.049 22 6.1 0.0 21 45 164 188 156 191 0.78 3 10 0.28 1.3e+02 3.7 0.1 23 51 194 222 188 225 0.79 4 10 0.44 2e+02 3.1 0.0 24 44 248 268 241 272 0.86 5 10 0.016 7.3 7.7 0.0 21 47 273 299 270 304 0.80 6 10 0.061 28 5.8 0.0 21 52 301 332 297 333 0.85 7 10 0.69 3.1e+02 2.4 0.0 21 45 329 353 327 361 0.86 8 10 3.2 1.4e+03 0.3 0.0 21 45 357 381 353 388 0.77 9 10 0.35 1.6e+02 3.4 0.1 21 46 385 410 381 416 0.82 10 10 8.1 3.7e+03 -1.0 0.0 22 45 414 437 411 443 0.81
Sequence Information
- Coding Sequence
- ATGGATAATAATTCGACACCCTTCATCAAGTCGGAGAAATACGAAGAAGCTATTGATGGTTTGGGAGCTCCAAGTAACGATCACGAAATGGAGGTCATGGACACCAAATTAGAAGAATTGCACCATTCTATTGATATTAAGGTAGAAGACCCTCCGAATTATACCGAATACCAGGATAGTAATGAGGGTCTTTTCTGGCATTCAAATAAACCCTTCCAAATTAAGATAAAAGAAATGGGATTGAACTTCCAAGATTTGGATCATAATTCCATTAACGTGCAAAACGAGACATCACTTCACCTTCAGAATACAAAAACTAGTAGTGAATCGTTTACAGGAACGAAACCGTTGACGTACGATATTGGTGACTACAATTCTGTATATAAGGGTGATGGTACACAAACGGTTGTAAAAAGATTTATGTGTGAAATCTGTGACTTCAAAACCGTACATAAGAAAAGTTTAAAACGGCACTTAAAAACTCATACAGGCGAGAAACCGTTCACGTGTGATATTTGTGACTACAGTTCTGTATATAAAGGAGATTTAAATCGTCATTTAAATACCCACACGGGCGAGAACACATTTAAGTGTGAAATTTGTGACTTTAAATCGCTGCATAAAAGAAGTTTAAAAAGGCATTTAAAAACTCATACAGACAAGAAACCGTTCATCTGTGATATTTATGGAAGATTTAAGGGAGATTTAAGTCGTCACTTAAATACAGATACGGGGGAAACCACATTTATGTGTGAAATTTGCGACTTTAAAACTCTTCATAGTAAAAGTTTAAAAAGGCATTTAATAACACATACCGGCGAGAAACCATTTACATGTGAAATTTGCAGATATAAATTTACGATCAAGGACAGTTTGAAACGTCATTTAAAAACCCACACGGGCGAAAAACCGTTTAAATGTAACATTTGTGACTACAAGACTGCACGAAGTAATTTTTTGAAACAGCATTTGAAAGTTCATACAGGAGAAAAACCGTTCCTTTGTGATTTATGTGACTACAAATGTAAAGAACCGAGGGATTTAAAATATCATTTATTTACACATACAGGCGAGAAGCCTTTCCCTTGTGAAATTTGCGGTAACAAATACGCACATATGAGTAGTTTAAAAGATCATTTAAAAACTCACACGGGCGAGAAACCGTTTAAGTGTGAAATTTGTGACTACAAATGTACACGAAATCAACATCTGAAAAGTCATTTAAAAATCCATACAGGCGAGAAATCGTTTAAATGTGAGATTTGCGACAACAAATTTACACGAAAGGAACATTTAAAAAATCATTTAAAAACTCATACGAACAAGAAAAGTTTTGGTGTTGCTACAGGATTGTAG
- Protein Sequence
- MDNNSTPFIKSEKYEEAIDGLGAPSNDHEMEVMDTKLEELHHSIDIKVEDPPNYTEYQDSNEGLFWHSNKPFQIKIKEMGLNFQDLDHNSINVQNETSLHLQNTKTSSESFTGTKPLTYDIGDYNSVYKGDGTQTVVKRFMCEICDFKTVHKKSLKRHLKTHTGEKPFTCDICDYSSVYKGDLNRHLNTHTGENTFKCEICDFKSLHKRSLKRHLKTHTDKKPFICDIYGRFKGDLSRHLNTDTGETTFMCEICDFKTLHSKSLKRHLITHTGEKPFTCEICRYKFTIKDSLKRHLKTHTGEKPFKCNICDYKTARSNFLKQHLKVHTGEKPFLCDLCDYKCKEPRDLKYHLFTHTGEKPFPCEICGNKYAHMSSLKDHLKTHTGEKPFKCEICDYKCTRNQHLKSHLKIHTGEKSFKCEICDNKFTRKEHLKNHLKTHTNKKSFGVATGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292477;
- 90% Identity
- iTF_01292477;
- 80% Identity
- iTF_01292477;