Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:7047723-7050114[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.1 9.4e+02 0.9 0.1 21 35 119 134 110 146 0.70

2 12 0.047 21 6.2 0.1 22 45 148 171 141 179 0.85

3 12 2.8 1.3e+03 0.5 0.0 21 44 175 198 171 203 0.77

4 12 0.035 16 6.6 0.0 21 46 203 228 193 234 0.84

5 12 0.37 1.7e+02 3.3 0.1 22 48 232 258 227 263 0.83

6 12 0.0025 1.1 10.2 0.0 21 52 287 318 284 320 0.83

7 12 5.5 2.5e+03 -0.5 0.1 21 34 315 329 311 339 0.77

8 12 0.04 18 6.4 0.0 17 47 338 369 330 376 0.77

9 12 0.015 6.9 7.7 0.1 22 52 400 430 397 432 0.79

10 12 0.97 4.4e+02 2.0 0.2 20 44 426 450 416 458 0.62

11 12 0.34 1.5e+02 3.4 0.0 21 52 455 486 442 488 0.83

12 12 0.051 23 6.0 0.1 14 45 475 507 471 516 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.1	9.4e+02	0.9	0.1	21	35	119	134	110	146	0.70
2	12	0.047	21	6.2	0.1	22	45	148	171	141	179	0.85
3	12	2.8	1.3e+03	0.5	0.0	21	44	175	198	171	203	0.77
4	12	0.035	16	6.6	0.0	21	46	203	228	193	234	0.84
5	12	0.37	1.7e+02	3.3	0.1	22	48	232	258	227	263	0.83
6	12	0.0025	1.1	10.2	0.0	21	52	287	318	284	320	0.83
7	12	5.5	2.5e+03	-0.5	0.1	21	34	315	329	311	339	0.77
8	12	0.04	18	6.4	0.0	17	47	338	369	330	376	0.77
9	12	0.015	6.9	7.7	0.1	22	52	400	430	397	432	0.79
10	12	0.97	4.4e+02	2.0	0.2	20	44	426	450	416	458	0.62
11	12	0.34	1.5e+02	3.4	0.0	21	52	455	486	442	488	0.83
12	12	0.051	23	6.0	0.1	14	45	475	507	471	516	0.76

Sequence Information

Coding Sequence: ATGGATGACGTAAATTTAACTCCAACTAAGTTAGAAATGAGATCGGCTGAAGACGAGAGATGTCTCGAGGACCAAAATACAACATCGAGGGAACCATCGCTGGAAGAAGGAATGAGCGTCAACGAATTCTCAAGCCATTCAAATAGCTGTCCGCAAATCAAGATGGAAAAATTGGAATTCAAGTTGGAAGATTTACATCATTCTATTGACATCAAAGATGAACCTTCAACTTCTGAAATTCAACCAGACAGAGAATCTCCACCAAAACCAGGTCGGAAGCGCTTCGCATGTAGAATTTGTGACTACAAAAGTGCACGTAAAGAGAATTTGAAAATTCATATAAGGACTCATACTGGAGAGAAACCTTTTGCGTGTGACATTTGCGATTACAAATCTGCACGAAAAGACGATTTACAAATTCACTTAAGAACTCACACCGGCGATAAACCATTAGCATGTGAAATATGTGACTATAAGTGTACACAAAAGGGAACTTTAAGAAGGCATTGGAAAACTCACACCGGTGAGAAGCCGTTTGCGTGTGAAATGTGTGATTACAAATGTATACAAAAGGTAACCTTAAAAGTTCATTTAAGAACTCACACCGGCGAGAAACCATTTGCGTGTGAAATTTGTAAACATAAATTTACAAATAAGGGAGATTTAAAAAGGCACTTGAGAACTCACACCGGCAAGAAACCGTTTAAATGTGAACTGTGTGACTACAAATGTGCAGAAAGCGGGAGTTTAAGAAAGCATTTGAAAACTCACACCAAGGAAAAACCGTTTGAGTGTGAAGTATGCGACTACAAATGTGCAGAAAAGGGGAGCTTAAAAATTCATTTAATAACTCATACCGGCGAGAAACCGTTGGCGTGTGAAATATGTGATTACAAATGTATACAAACGGGAAATTTAAAAAAGCATTTGAAAACTCACACCGGCGAAAAACCGTTTGTTTGTGAAATATGCGGGTATAAATGTATCGCAAAGGAAACCTTAAAAGTTCATTTTAGAAGTCATACCGGCGAGAAACCGTTCGGATGTGAAATTTGTGACTACAAATGTGCGAAAAAGGGAGATTTGAAAAGACACTTAGGAACTCACACCGGCAAGAAACCATTCGCGTGTCAAATTTGTGACTACAAATGCGCCGAAAAGGCGAGTTTAAATGTTCATTTACTAATTCACGTCGGCGAGAAACCGTTAGCGTGCGAAATATGTGATTACAAATGTATACAAAAGGGAACTTTAAAAAGGCATTTGAGAACTCATACCGGTGAGAAACCGTTTGTGTGTGAAATATGCGAGTACAAATGTATAGCAAAGCAACCTTTAAAAATTCATTTAAGAACTCATACCGGCGAGAAACCGTTTAAGTGTGAATTTTGTAACTACAAATGTACACAACAAGGAACTTTTAAAAGGCATTTAAGAACTCATACCGGCGAGAAGCCGTTTGTATGTGAAATATGTGACCACAAATTTGTAAGAATGGAACATTTAAAGAGGCATTTGAAAACTCACACCGAGCAGAAATCTTTCGAGTGTGAAATTTGTAACTACAAATGTGTAGAAAAGAGAACTTTTGACAGGCATCGGATAACTCACACCGGCGAAAAAATTACGACTAAATAA
Protein Sequence: MDDVNLTPTKLEMRSAEDERCLEDQNTTSREPSLEEGMSVNEFSSHSNSCPQIKMEKLEFKLEDLHHSIDIKDEPSTSEIQPDRESPPKPGRKRFACRICDYKSARKENLKIHIRTHTGEKPFACDICDYKSARKDDLQIHLRTHTGDKPLACEICDYKCTQKGTLRRHWKTHTGEKPFACEMCDYKCIQKVTLKVHLRTHTGEKPFACEICKHKFTNKGDLKRHLRTHTGKKPFKCELCDYKCAESGSLRKHLKTHTKEKPFECEVCDYKCAEKGSLKIHLITHTGEKPLACEICDYKCIQTGNLKKHLKTHTGEKPFVCEICGYKCIAKETLKVHFRSHTGEKPFGCEICDYKCAKKGDLKRHLGTHTGKKPFACQICDYKCAEKASLNVHLLIHVGEKPLACEICDYKCIQKGTLKRHLRTHTGEKPFVCEICEYKCIAKQPLKIHLRTHTGEKPFKCEFCNYKCTQQGTFKRHLRTHTGEKPFVCEICDHKFVRMEHLKRHLKTHTEQKSFECEICNYKCVEKRTFDRHRITHTGEKITTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292061;
90% Identity: iTF_01292061;
80% Identity: iTF_01292061;