Rful008867.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:5805840-5807015[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0061 2.7 9.0 0.1 22 47 54 79 45 85 0.81 2 12 1.1 4.9e+02 1.8 0.0 22 45 82 105 77 113 0.76 3 12 3.6 1.6e+03 0.1 0.1 22 46 110 134 105 141 0.75 4 12 3 1.3e+03 0.4 0.1 21 31 137 147 133 163 0.77 5 12 1.1 4.9e+02 1.8 0.0 21 36 165 181 157 196 0.70 6 12 0.13 58 4.8 0.1 21 46 193 218 188 224 0.80 7 12 0.071 32 5.6 0.2 21 46 221 246 217 248 0.88 8 12 0.00022 0.099 13.6 0.1 21 45 249 273 245 280 0.92 9 12 3.1 1.4e+03 0.4 0.1 26 47 283 304 277 310 0.74 10 12 0.92 4.2e+02 2.0 0.1 22 48 307 333 303 337 0.76 11 12 0.0086 3.9 8.5 0.0 21 52 334 365 330 367 0.86 12 12 0.045 20 6.2 0.0 21 45 362 386 358 389 0.91
Sequence Information
- Coding Sequence
- ATGAATAATTACGAAGTTCAAAAAAGAGAAGAACCGGAGAACATGGATCTCAATTTTCAAGACCTGCATCATTCGATTGACATTAAAGAAGAAACTTCTACTTTAACATTTGAAGTAAATGACGAATTTGAGTCTGAAGAAAAAAGGAATTTGGCTGGTGAGGAAACATTTGCGTGTACAATTTGTACATATGAAACTGCAAAAAAGAGAAATTTGAGGAATCACTTAAAAGCTCATTCCGGTGATAAACCTTTTAAATGTCATATTTGTGACTATAAAAGTATTCGCAAAGAAGATTTAAAGGATCATATAAAAACCCATACTGGGAAAAAACCGTTTGCGTGTACTTTCTGCAAGTATAAATGTGTACGTAGAAGTGTTTTAAATATTCATTTAAAAGTTCATACTGGCGAGAAACCATTTGCTTGTTCAATTTGTGATTATAAATGTGCTAATAAGGGAAGTTTAAGTTTACATTTGAAAAGTCATTCTGGTGAAAAACCATTTGAGTGTACAATTTGTGATTATAAAAGTTTACGTAGGGGAACTTTGAACGCTCATATGAAAATTCATACCGGCGAGAAGCCATTTGGGTGTACAATTTGTGACTACAAATGTGCACGTAAATCTGTTTTAAGGGTTCATTTAAAAACTCATACTGGTGAAAAGCCATATTCCTGCACAATTTGTGAATACAAATCCGCATGTAAACGGAATTTGAATCTTCATCTAAAAATTCATACCGGTGAGAAACCGTATGCCTGTCCAATATGTGGTCATACATCTGCCCAAAAACAGAATTTGAAGGAGCACTTAAAAACCCACATTGGTAATAATAAATCTTTTTCGTGTGAAATGTGTGACTATAAATGTGCACGCAAACAAAATTTGCAACAACATTTACTAGTTCATTCCGGTCAGAAACCATTTAAATGTACAATTTGTCACTATAAATGCGCACGCAAGGGTGAACTGAACAATCATTTGAAAGTCCATAGTGGCGAAAAGCCCTTTGCGTGTACAATTTGTGATTATAAAAGTGCGCATAAACACAATTTGCGGGACCACTTGAATACCCACACAAATGAGAAGCCTTTTATATGTGCGGTTTGTAACGTAAAATTTTCTGCAAAAAAATCTTTGAAACGGCATTTAAAAACGCATTCCGAAAAGTAA
- Protein Sequence
- MNNYEVQKREEPENMDLNFQDLHHSIDIKEETSTLTFEVNDEFESEEKRNLAGEETFACTICTYETAKKRNLRNHLKAHSGDKPFKCHICDYKSIRKEDLKDHIKTHTGKKPFACTFCKYKCVRRSVLNIHLKVHTGEKPFACSICDYKCANKGSLSLHLKSHSGEKPFECTICDYKSLRRGTLNAHMKIHTGEKPFGCTICDYKCARKSVLRVHLKTHTGEKPYSCTICEYKSACKRNLNLHLKIHTGEKPYACPICGHTSAQKQNLKEHLKTHIGNNKSFSCEMCDYKCARKQNLQQHLLVHSGQKPFKCTICHYKCARKGELNNHLKVHSGEKPFACTICDYKSAHKHNLRDHLNTHTNEKPFICAVCNVKFSAKKSLKRHLKTHSEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292306;
- 90% Identity
- iTF_01292306;
- 80% Identity
- iTF_01292306;