Rful007132.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6126225-6127502[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3 1.3e+03 0.4 0.1 20 31 89 100 86 116 0.75 2 9 0.00076 0.34 11.9 0.0 21 52 118 149 114 151 0.89 3 9 0.00048 0.22 12.5 0.1 15 46 168 199 160 205 0.84 4 9 0.19 87 4.2 0.0 21 45 202 226 198 229 0.89 5 9 0.25 1.1e+02 3.8 0.3 18 31 227 240 226 256 0.75 6 9 1.4 6.3e+02 1.5 0.2 26 50 263 291 251 294 0.70 7 9 0.038 17 6.5 0.1 23 52 316 345 310 350 0.82 8 9 1.6 7.4e+02 1.2 0.2 22 46 371 395 365 405 0.68 9 9 6.8 3.1e+03 -0.8 0.1 21 44 398 421 390 424 0.75
Sequence Information
- Coding Sequence
- ATGGCTCACGTGCTACCCCAAGAAGAGTTACCATTTCTGGACAAGATCGAGAAAACTGATATTTCCGAAATTAAATCACAAGACTTGGTGGAAGACGTGAAAGTTAAATTAGAAGATTTGCATCATTCAATAAACATTAAAGAAGAGGTTGAAAGTGAACAATTAACTCGAAAGAGTTCCGTAAGTTTGAATTTATTCGAGTGTGATATTTGTGGCTATAAAACTCCATATAAAGCATACTTATGTAGTCATTTCAAAAAACACAGAGGGGAGAAACCGTATGCGTGTGAAATTTGTGGCTATAAATGTAATATGAAAGGAACTTTGAGTGTTCACTTAAAAATTCATACCGGCGAGAAACCGAACACCTGTGAAATTTGTGGCCGTAAATTTTTACAAAAATCGGCTTTAAATCGGCATTTAAAAATTCACACTGGTGAAAAACCGTATGGTTGTGAATTGTGTGACTATAAGGGCAAAGTAAAAGCAGATGTGATAAAGCATAGGAGAACCCACACCGGAGAGAGACCGTTCTTGTGTAAAATATGTGGATTGACATTTTCACAGAGTTATCATTTAAAAAGGCATTTAAGAACTCATACCGGGGAAAAACCGTTTGCTTGTAAACTGTGTAACAGTAAATTTACAGAGAGTACAAGTTTAAAACTTCACTTACAACGTCACACCGGCGAAAAGCCGTACACTTGTGCTATTTGTGACTTTAAAACAGCATATAAACCACATTTAAGTAGGCATTCAAAAACGCACATCCCCAACAAACTTTATACGTGTTCTATTTGTGACTATAAAGTTACACTAAAATCGACTCTAAAAATGCACATGAAAACGCACACCGAGAAGAGACCCTTCGCTTGTAAAATCTGCGACTATAGAAGTACAAGTAAAACAATTCTAACGGGACATTTAAAAACCCACACCGGCGCAAAACCGTTCACATGTGAAATTTGCTCCTATAAATTTACCCGAAAGGCATCCTTAAAATTGCACTTAAAACTTCACACCGGCGAGAAGCCGTTCGTTTGTGGAGTTTGTGACTCTAAGTTTGCACGAAAGGCGACGTTGGAATTTCATTTAAAAACCCACACCGGGGAAAAAGCGTATACTTGTGAATTTTGTGACCGTAAATTTATACAACAATCGACCTTGACTCAGCATTTAAGAGTTCACACTGGCGAGCGGCCGTTTGCTTGTGCGTTTTGTGACTATAAATGTGCCCAAAAATCCTATTTAATAAAGCATTTCAAAATTCACAAGTGA
- Protein Sequence
- MAHVLPQEELPFLDKIEKTDISEIKSQDLVEDVKVKLEDLHHSINIKEEVESEQLTRKSSVSLNLFECDICGYKTPYKAYLCSHFKKHRGEKPYACEICGYKCNMKGTLSVHLKIHTGEKPNTCEICGRKFLQKSALNRHLKIHTGEKPYGCELCDYKGKVKADVIKHRRTHTGERPFLCKICGLTFSQSYHLKRHLRTHTGEKPFACKLCNSKFTESTSLKLHLQRHTGEKPYTCAICDFKTAYKPHLSRHSKTHIPNKLYTCSICDYKVTLKSTLKMHMKTHTEKRPFACKICDYRSTSKTILTGHLKTHTGAKPFTCEICSYKFTRKASLKLHLKLHTGEKPFVCGVCDSKFARKATLEFHLKTHTGEKAYTCEFCDRKFIQQSTLTQHLRVHTGERPFACAFCDYKCAQKSYLIKHFKIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292188;
- 90% Identity
- iTF_01292188;
- 80% Identity
- iTF_01292188;