Rful010930.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14588803-14590339[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.1 9.7e+02 0.9 0.0 21 44 106 129 102 132 0.77 2 11 0.072 32 5.6 0.0 21 46 134 159 130 161 0.80 3 11 0.025 11 7.0 0.0 22 46 163 187 160 190 0.92 4 11 0.09 41 5.3 0.4 21 44 190 213 186 217 0.81 5 11 0.43 2e+02 3.1 0.1 21 44 218 241 214 250 0.80 6 11 0.0028 1.3 10.1 0.1 22 47 275 300 270 305 0.85 7 11 0.01 4.7 8.3 0.1 21 45 302 326 299 334 0.91 8 11 0.034 15 6.6 0.1 21 52 381 412 364 414 0.87 9 11 0.35 1.6e+02 3.4 0.2 21 46 409 434 406 440 0.80 10 11 0.5 2.3e+02 2.9 0.1 22 52 438 468 435 469 0.83 11 11 0.6 2.7e+02 2.6 0.6 23 44 467 488 463 493 0.73
Sequence Information
- Coding Sequence
- ATGGCCCAAGTATTACCATCGGTAGATTTACAAATTAAGGAAAACATCAGTCCAGTTTTGGAGGTTTTATCTAATTTTAGTAATGTTTGTGATGTTATTAAGACTGAAGAATTGGAAGACGTGAAATTTAATTTAGATGAATTGCATCATTCAATTGACATTAAGGAAGAAAACATTTCTGAAGAATTAATACATGAGAAACTTGCAAGAAAATGTCATGCAACTCACCCCACTGAGAAGTCGTTTAGTTGTAAATTTTGTGACTACGAATGTTCGCAAAAAGTACATCTGAAATTTCATTTAGTAAGTCACACCGGCGAGAAACCGTTTGTTTGTGATATTTGCGCATTTAAATGTGCCCGCAAAGCAGATTTAAAAGGTCACTTGGTAACTCACAGTGGTGAAAAACCATTTGCGTGCAAAATTTGTGACTATAAATGCGGTAGAAAATCCGATTTAACAAGGCATTTAAAAATTCACCCAGACGAGAAGCCCTTAATTTGTGAAATTTGTGACCAAAAATTTACAAAAAAGTTTAATTTAACTAGGCATTTAAAAATTCACACTACGGAGCAACCGCTTATTTGCGAAATTTGTAACTATAAATGTGCACGAAAAGATTATTTAAAAAGGCATATGTGGACCCATACTGGGGAGCAACCGTTTATTTGTGAAATTTGCGCAGATAAATTTTTATGTAAAGCGGATTTAAAAAATCACTTACTGACTCACACCGGAGATAAACCTTATCCGTGTGATATTTGTGACTTTAAATGTGCTAGAAAAACCACTTTAAAAATGCATTTAATAACTCATACGGGCGATAAGCCCTTTGCTTGTGAAATCTGCCACCAAAAATTTACAAGAAAATCAAATTTGAAAAGGCATTTAAAAACTCATACCGGGGAAAAACCATTTTCGTGTAAAATTTGTGTTTGTAAATTTAAACAAAAAGCACATTTGGAACGGCATGTGAAAACTCATATTGGCGAAAAAACTTTTAGTTGTAAAATTTGTGAATATAAATGTACAGAAAAGGCGGCCTTACAATTGCACGTAAAAGGTCACACACCGGACGAAATTTGTCGATCTAAACGAGCGAGAAAAGCAGCTTTAAGAATGAATTTAAAAAATCAAGCAGGTGAGCAGCTCTTTGCTTGTGAAATCTGCGAGCAAAAATTTACAAGAAGACCGAATTTAACCAGGCATTTAACTATTCACACCGGTGAGAAACCGTTCATATGTGAAATTTGTAACTATAAATGCGCAAGAAAATCCACCTTAAAAATGCATTTAAAAATCCACACGGGCGAAAAAGCCTTTGTTTGCGAAATGTGCAATAGGAAGTTTACCAACAAAGCAAATTTACTGAGACATTTAAAAATTCACACTGGACATAAACCGTTTTGTTGTTCAATTTGTCACTATAAATTTATACAAAAATCTCATTTGGTACGACATACGAAAACTCATAAAGTAAAATATATTTTTGGGACAATTCTACTGAATTAG
- Protein Sequence
- MAQVLPSVDLQIKENISPVLEVLSNFSNVCDVIKTEELEDVKFNLDELHHSIDIKEENISEELIHEKLARKCHATHPTEKSFSCKFCDYECSQKVHLKFHLVSHTGEKPFVCDICAFKCARKADLKGHLVTHSGEKPFACKICDYKCGRKSDLTRHLKIHPDEKPLICEICDQKFTKKFNLTRHLKIHTTEQPLICEICNYKCARKDYLKRHMWTHTGEQPFICEICADKFLCKADLKNHLLTHTGDKPYPCDICDFKCARKTTLKMHLITHTGDKPFACEICHQKFTRKSNLKRHLKTHTGEKPFSCKICVCKFKQKAHLERHVKTHIGEKTFSCKICEYKCTEKAALQLHVKGHTPDEICRSKRARKAALRMNLKNQAGEQLFACEICEQKFTRRPNLTRHLTIHTGEKPFICEICNYKCARKSTLKMHLKIHTGEKAFVCEMCNRKFTNKANLLRHLKIHTGHKPFCCSICHYKFIQKSHLVRHTKTHKVKYIFGTILLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292174;
- 90% Identity
- iTF_01292174;
- 80% Identity
- iTF_01292174;