Rful005845.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:11433145-11434578[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 9.2e+02 0.9 0.1 21 45 60 84 56 87 0.86 2 11 0.058 26 5.9 0.0 22 45 89 112 84 116 0.91 3 11 0.16 70 4.5 0.1 21 46 116 141 112 148 0.83 4 11 1.7 7.5e+02 1.2 0.0 21 46 144 169 136 175 0.80 5 11 0.073 33 5.6 0.1 21 45 172 196 164 201 0.89 6 11 2.2 9.9e+02 0.8 0.0 23 46 202 225 196 228 0.86 7 11 0.055 25 5.9 0.0 21 46 228 253 225 261 0.81 8 11 0.073 33 5.6 0.2 22 52 285 315 274 317 0.85 9 11 2.1 9.4e+02 0.9 0.1 23 45 314 336 310 339 0.87 10 11 0.017 7.7 7.6 0.1 21 44 340 363 336 372 0.87 11 11 0.77 3.5e+02 2.3 0.0 21 44 398 421 385 430 0.74
Sequence Information
- Coding Sequence
- ATGGAAATCAAAGGTGAAAATTTGGAAATGCCCTATAATCCAAATATCAAAATCAATATTAAAACAGAGCAGATGGAAGATATTAAATTTAATTTAGAAGATTTACATCATTCGATCGACATTAAAGATGAGCCCGAGGGTGAAGTTGCTCAAAATTTACATGCAAAAATTCATTCCAGTGAGGAATTGTTTAATTGTGCAGTGTGTGACATGAAATGTGCGAACAAGTCAAGTTTGAAAAGACATTTAAAAACTCACCCCCGCGAAAAACCGTACACGTGCGAATTTTGTGGTTATAAATTTGGACAGAGGTCGAATTTGAAAATGCATTTAAGAACGCACACCGGTGAAAAACCATACGCTTGTGATATCTGTGATTATAAATGTACCCAAAAATCAGATTTAGAAAAACATATTAGAACGCACACGGGTGAAAAACCATTTTCTTGTGGGAGTTGTGGTTATAAATGCGCACAAAAGTCTGATTTAAAAAAACACTTTAAAACTCACACTGGTGAGAAACCATTCAGTTGTGAATTTTGTACCTATAAATGCACACAAAAATCGGATTTACAGAGGCATTTAAGAACGCACAAAGGCAAGGGACCGTTTATTTGCGAAATTTGTGACATTAAATTTCCACAAAAGTCAGCTTTAAAATTGCATTTAAAAGTTCACACTGACGAAAAGCCGTTTACTTGTGACGTTTGTGGATTTAAATGCTCGAAAAAGTCAAATTTAAAATTGCACTTAAGAACTCACACCGATTTAAAACCGTTTTCATGCGAAATTTGTGACTATAAATGTGGCCGAAAATCAAGCTTAAAGGTGCATTCTAAAGTACACACCGGTGAAAAATCGTTCCTTTGTAAGATCTGTGACTATAAATGCGCACAAAATTCAACGTTACAACGGCACTTAAAAACTCACACCACCGTGAAACCGCACTTGTGTCAAATTTGTGAATTAAAATTTGCAACACGGTCAAATTTGAAAATGCATCTAAAAACGCATACTGGCGAAAAACCGTATACTTGTGATATTTGTGTCTATAAATGTACACAAAAATCGGATTTAAAAAAGCATGCAAGGACCCACAGCGGTGTGAGACCGTTTCGATGTCATTATACATTTTGTGATTATAAATCTGCACAAAAGTCTGATTTAAATAAGCACTTAAAAATCCACACCGGGGAAAAACCGTTTGGTTGTGAACTTTGCAGCTATAAATGTATTCAAAAATCCGATATGGATAGACATTATTTAAGAAATCACAAGGAGAAGCATGCGAAATTTATGACTATAAGTAATGTGGACGAAAATCAACTATAA
- Protein Sequence
- MEIKGENLEMPYNPNIKINIKTEQMEDIKFNLEDLHHSIDIKDEPEGEVAQNLHAKIHSSEELFNCAVCDMKCANKSSLKRHLKTHPREKPYTCEFCGYKFGQRSNLKMHLRTHTGEKPYACDICDYKCTQKSDLEKHIRTHTGEKPFSCGSCGYKCAQKSDLKKHFKTHTGEKPFSCEFCTYKCTQKSDLQRHLRTHKGKGPFICEICDIKFPQKSALKLHLKVHTDEKPFTCDVCGFKCSKKSNLKLHLRTHTDLKPFSCEICDYKCGRKSSLKVHSKVHTGEKSFLCKICDYKCAQNSTLQRHLKTHTTVKPHLCQICELKFATRSNLKMHLKTHTGEKPYTCDICVYKCTQKSDLKKHARTHSGVRPFRCHYTFCDYKSAQKSDLNKHLKIHTGEKPFGCELCSYKCIQKSDMDRHYLRNHKEKHAKFMTISNVDENQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292109;
- 90% Identity
- iTF_01292109;
- 80% Identity
- iTF_01292109;