Rful006487.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:2956044-2957318[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 56 4.8 0.1 20 46 55 81 50 89 0.80 2 11 3.4 1.5e+03 0.2 0.0 22 47 85 110 74 117 0.71 3 11 0.71 3.2e+02 2.4 0.0 21 46 112 137 106 145 0.77 4 11 2.1 9.3e+02 0.9 0.2 21 31 140 150 132 167 0.75 5 11 0.039 17 6.4 0.0 21 47 168 194 162 200 0.85 6 11 0.06 27 5.8 0.0 22 51 197 226 192 228 0.85 7 11 0.73 3.3e+02 2.4 0.2 21 31 224 234 220 250 0.77 8 11 0.0033 1.5 9.9 0.1 21 47 252 278 248 285 0.86 9 11 0.00051 0.23 12.4 0.1 11 47 297 334 292 341 0.84 10 11 0.12 52 4.9 0.2 21 52 364 395 358 397 0.75 11 11 7.3 3.3e+03 -0.9 0.1 22 48 393 419 385 420 0.72
Sequence Information
- Coding Sequence
- ATGTTAGGTTTGTTACAGGAACCTTCCTGCCATTCAAATAGCTACTGCCAAATTAAAACAGAAGAAATAGAATTCAAGTTGGAAGATTTGCATCATTCCATTGACATTAAAGAAGAGATCACCGTTATAGAATGTCACTTGGGAAAAGAAATCAAACCGGAAACAAGCGAAAAACCATTTTCTTGTGAAATTTGCGGCTATAAATGTAGTAACAAAAGTAATTTTAAAATTCATTTAAGAACTCACAGCGGTGATAAGCCTTTTTTGTGTGAAATTTGTGATTTTAGAACTACGCGTAAAGAAAGCTTAAAAATTCACTTGAGAACTCATACAGGCGAGAAACCGTTTGTGTGTGAAATTTGTGACTTTAAAAGTGCTCGTAAGGGAAGCTTAAGGGTTCACTTAAGAACACATACTGATGAGAAACCATTTACGTGCGAAATGTGCAATTTAAAATATGCGCATAAAGTAAGTTTAATAAATCATTTACGAACACATACCGGCGAGAAACCATTTAGTTGTGATATTTGTTCTTACAAGTGCACACAAAAAGGGAATTTTAAAACTCATTTGAGGACTCATACAGGCGATAAACCGTTCACATGTGATATTTGTGATTTTAAGTGTGCAGATCGAGGAAATTTAAAAATTCATTTAAGAATACATACCGGGGAAAAACCGTTTACATGTGAAATTTGTGGATTTAGTAGTGCTCGTAAGGAAAGCTTGGTGATTCATTTACGAACGCATACAGGCGAAAAGCCGTTTTCATGTTCGATGTGTAATTTCAAATGTAGACAGAACAAAAACTTTAAAATTCACTTAAGAACACACACAGGCGAGAAACCGTTTTCGTGTGAACTTTGCGATCATAAATTTGCAGATAGGGGATGTTTAAAAAAGCATTCAAGAACCCACAGTGGGGAAAAGCCGTTCACGTGTGACATTTGTAGCTACAAATGCGCACAGAAAGGGAATTTCAAAATTCACTTAAGAACTCATACCGGCGAAAAGCCGTTCGCCTGTGAATTTTGCGATTTTAAATATGCACGTAAAGAAAGCTTAAACATTCATTTAAGAATCCATACCGGGGAAAAACCGTATACATGTAAAATTTGTGATTTTAAATGTGCACGAAAGGACAGTTTAAACATTCACTTAAGGAGCCACACCGGGGCAAAACCGTTCGCGTGCGAAAAGTGTAATTTTAAATGCGTTCGGAAAGGAAATTTAAAACTTCATTTAAGTAGTACTCATGCAGGGGAAAAGTGTTGA
- Protein Sequence
- MLGLLQEPSCHSNSYCQIKTEEIEFKLEDLHHSIDIKEEITVIECHLGKEIKPETSEKPFSCEICGYKCSNKSNFKIHLRTHSGDKPFLCEICDFRTTRKESLKIHLRTHTGEKPFVCEICDFKSARKGSLRVHLRTHTDEKPFTCEMCNLKYAHKVSLINHLRTHTGEKPFSCDICSYKCTQKGNFKTHLRTHTGDKPFTCDICDFKCADRGNLKIHLRIHTGEKPFTCEICGFSSARKESLVIHLRTHTGEKPFSCSMCNFKCRQNKNFKIHLRTHTGEKPFSCELCDHKFADRGCLKKHSRTHSGEKPFTCDICSYKCAQKGNFKIHLRTHTGEKPFACEFCDFKYARKESLNIHLRIHTGEKPYTCKICDFKCARKDSLNIHLRSHTGAKPFACEKCNFKCVRKGNLKLHLSSTHAGEKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292098;
- 90% Identity
- iTF_01292098;
- 80% Identity
- iTF_01292098;