Rful006828.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:22045340-22046605[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.063 29 5.7 0.1 23 47 94 118 89 122 0.89 2 8 0.0018 0.81 10.7 0.2 21 52 120 151 118 153 0.89 3 8 1.7 7.5e+02 1.2 0.0 21 44 176 199 171 209 0.73 4 8 1.3 5.9e+02 1.5 0.0 21 52 204 235 199 238 0.81 5 8 6.7 3e+03 -0.7 0.0 21 45 260 284 243 289 0.79 6 8 0.038 17 6.5 0.0 20 51 286 317 276 319 0.82 7 8 0.022 10 7.2 0.0 21 45 315 339 311 346 0.87 8 8 0.031 14 6.7 0.1 21 49 343 371 339 375 0.87
Sequence Information
- Coding Sequence
- ATGGAGGAAGTAAAATTTTCTGAAGTGCTGCAAAATAATAAAAAAACTTCAACTGAAGGTTTGCAAGAACTGACAAATTCGGTGCATGATTATGTCATTAAAAAAGAGGAACAAGAAATAGCATTGAATTTGCATCACTCAATTGAAATTAAAGAGGAAAACTTTGGTATTGAACCGGAACGGAATGGAGACAGCAAAGTACAGATGCCTGAAGGGTACAGCATAAAATGCATCAATAAATTTGAACTACAAAATCATTCAAAAATTCATGACGTCATCAAGCCATTTAAGTGTGAAATTTGTGAGTCTAAATTTTTGTATAAAAGACAGTTGAATAGGCACTTAAAAATTCATACGTGCGAAAAACCGTTTACTTGTGCAATATGTGGGTTTCAGTGTGCCCAAAAGGAATATTTAAGGGGCCATTTAAAGATTCACGCTGGTAAAAAACCGTTTGCTTGTGAATTTTGTGATTATAAATGTGCAGGTAACAACAATTTAAAAGTTCATATGCATACTCATACCGGGGAAAAACCGTTTGCTTGTGAGATTTGTGATTACAAAACAGCAGGAAAGCGCAGTTTGATGCTGCACTTTAGAACTCATACTGGCGAAAAACCATTTGTATGTGAATTGTGCGGCTATAGAAGTGCGGGAAAATACAATTTGAAACTTCACTTAAAAATTCATTCCAACCTAAAACCGTTCGCTTGTGAACTTTGTGACTACAGGTCTTCAAGAAAACGCAGTTTGACGCTGCATTTTAGAATCCATACCGGGGAAAAGCCGTTTTCTTGCGAATTTTGTGACTATAAATCTGTAGATAAGAAAGGTTTGAAGAAACATACTGAAACTCACGGGGAAAAACAGTTTTCTTGCCAAATTTGTAACGCTGCATTTTGGCATAAAGTAGATTTGAAACGCCATTTTAGGATTCATACCGGAGAGAAGCCCTTTGAATGTTCAATTTGTAACTTTAAATTTTCTCAAAAGGAGAACTTGAAGGCGCATATACGAACCCATACCGGTGAAAAACCGTTTAGTTGCGAAATTTGTGACTCAAGTTTTTCCTATAAACGACAATTGATAAGACATTCCAATGAAAGCCATAATATGAAGAAAACGTTTCCTTGTTATATTTTTAACTGA
- Protein Sequence
- MEEVKFSEVLQNNKKTSTEGLQELTNSVHDYVIKKEEQEIALNLHHSIEIKEENFGIEPERNGDSKVQMPEGYSIKCINKFELQNHSKIHDVIKPFKCEICESKFLYKRQLNRHLKIHTCEKPFTCAICGFQCAQKEYLRGHLKIHAGKKPFACEFCDYKCAGNNNLKVHMHTHTGEKPFACEICDYKTAGKRSLMLHFRTHTGEKPFVCELCGYRSAGKYNLKLHLKIHSNLKPFACELCDYRSSRKRSLTLHFRIHTGEKPFSCEFCDYKSVDKKGLKKHTETHGEKQFSCQICNAAFWHKVDLKRHFRIHTGEKPFECSICNFKFSQKENLKAHIRTHTGEKPFSCEICDSSFSYKRQLIRHSNESHNMKKTFPCYIFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292514;
- 90% Identity
- iTF_01292514;
- 80% Identity
- iTF_01292514;