Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:7362879-7364904[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.7 1.2e+03 0.5 0.0 21 47 67 93 46 99 0.70

2 13 0.04 18 6.4 0.2 21 47 151 177 147 183 0.80

3 13 1.5 6.8e+02 1.3 0.1 21 30 207 216 201 229 0.86

4 13 7.2 3.3e+03 -0.8 0.1 21 31 235 245 224 261 0.67

5 13 8.5 3.9e+03 -1.1 0.0 21 31 291 301 282 321 0.76

6 13 1.3 6.1e+02 1.5 0.1 21 45 319 343 309 346 0.75

7 13 0.0017 0.76 10.8 0.1 21 48 347 374 343 380 0.87

8 13 0.18 81 4.3 0.0 20 52 430 462 427 464 0.83

9 13 1.2 5.3e+02 1.7 0.1 21 45 459 483 457 489 0.79

10 13 0.19 85 4.2 0.0 21 45 487 511 479 514 0.88

11 13 0.048 22 6.1 0.3 21 44 515 538 512 545 0.77

12 13 9.8 4.4e+03 -1.3 0.0 26 46 548 568 540 573 0.74

13 13 1.4e-05 0.0062 17.5 0.0 21 51 571 601 567 602 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.7	1.2e+03	0.5	0.0	21	47	67	93	46	99	0.70
2	13	0.04	18	6.4	0.2	21	47	151	177	147	183	0.80
3	13	1.5	6.8e+02	1.3	0.1	21	30	207	216	201	229	0.86
4	13	7.2	3.3e+03	-0.8	0.1	21	31	235	245	224	261	0.67
5	13	8.5	3.9e+03	-1.1	0.0	21	31	291	301	282	321	0.76
6	13	1.3	6.1e+02	1.5	0.1	21	45	319	343	309	346	0.75
7	13	0.0017	0.76	10.8	0.1	21	48	347	374	343	380	0.87
8	13	0.18	81	4.3	0.0	20	52	430	462	427	464	0.83
9	13	1.2	5.3e+02	1.7	0.1	21	45	459	483	457	489	0.79
10	13	0.19	85	4.2	0.0	21	45	487	511	479	514	0.88
11	13	0.048	22	6.1	0.3	21	44	515	538	512	545	0.77
12	13	9.8	4.4e+03	-1.3	0.0	26	46	548	568	540	573	0.74
13	13	1.4e-05	0.0062	17.5	0.0	21	51	571	601	567	602	0.90

Sequence Information

Coding Sequence: ATGTCCGAGTGCTCGGATATGGAACGCTTAGTAATGGTAGCTTTGTTACAGGGTCTTATCTCGGATTCAAGTAACTGCTTCGAAATTCAGACAAAAGACACAGAATCGAACTTGGAAGAAGAGACTTTAGTCCAACGTCGGAAAGCAAAAACCAGTGGTAGTAAATTGCAGAGTCGAAAAATTTCTAATTATAAATCAGGTAACAAACCATTTATGTGTGAAGTTTGTGACTATCAATCTGCACGAAAGGATAAATTAAAAAAACATTTAAAAACTCATACAGGCGAGAAGCCGTTTAAGTGTCATACTTGTGAGTACAAATGTGCACTAAAAGTATCACTAAAAAAACATTTAAAAACTCATACAACCGAAAAAACGTTCGAGTGTGAAGTTTGTGGCCATCGATCTGCACGGAAGGATCATTTAAGAGATCATTTAAAAACTCATACAGGCGAGAAGCCATTTAAGTGTGATATTTGTGAATACAAATGTGCACGAAAGGATAGATTAAAACGACATTTAAAAACTCATACAGGCGAAAAGCCGTTTAAGTGTGAAATTTGTGACTTCAAATCTGCACGTAAAGATCAGTTAACCGTACATTTAAAAACGCATTCTGGTGAGAATCCGTTTACGTGTAAAATTTGTGATAAGAAATTAGCATCAAAATGTAGCTTTAAAACTCATTCAAAAACTCATGCGCGCGAGAAATCGTTCACGTGTGAAATTTGCGGTTATAAATGTCCACTAAGAAGTACTTTAAATAAGCATTTAATCATTCATACTGGCGAAAAGCTATTTAAGTGTGAAATTTGTGGATACAAATGTAAGAGGAAGGTGTATTTAAAAAGTCATTTAAGAACACATACAGGCGAAAAACCGTTTAAATGTGAAATTTGTGACTTCAAATTCACACTGAAGATCACTTTAACAAATCATTTAAGAACTCATTCGGGCGAGAAACCATTTCCATGTGAAATTTGTCATCGCAAATTTGCACGAAAATCTGATGTAAAAGATCATTTAACAATTCATACGGGCGAAAAGCCGTTTGCGTGTAAAATTTGTGATATGAAATTTAGATGTAAAAGAAGTTTAATGAGACATTTAAAAACCCATACAGGCGAAAAACCGTATAAGTGTGAATTTTGCGACTATAAATGTGCTCATAAGAATTATTTACAACTTCATTTAATAACCCACACGGTTAAAAAAGAGTTTAAGTGTAAAAATTGTGACTTTAAATCTGAAGTTAAACAACTTTTAAAAAATCATTTGAAAACTCATAAAAGTGAAAAATCGTTTACGTGTGGCATTTGTGACTTCAAGTGTACACGTAAGGAGAGTTTAAAAGATCATTTAAGAATTCACACAGGTGAAAAGCCGTTTCTGTGTGAAATTTGTGGCTACGGATGTGCAGTACAGCGCAGTTTAAAGGATCATTTAAGAACTCATACTGGTGAAAAACCGTTTAACTGTGTAATTTGCAGTTCCAAATTTGCTTTAAAATCGACTTTAAAAAGGCATTTAAAAACTCATACAGGCGAGAAACCAATAACTTGTGACATTTGTGATTACACATGTATAGAGAAGCAACAATTACAACAGCATTTAATAAAACATACAGGGGAAAAACTGTTTAAATGTGCAATTTGTGACTACCAATTTGCACGAATAGCATATTTGAGAGATCACTTAAAAATTCATACCGGCGAGAAGCCGTTTACGTGTGAAATTTGTGAAAAGAAATTTAGAACTTCAAGCAATTTAAGAGGTCATTTAAAAATTCATACTGGCGCGAAATTGTTTCAGTGTGCAATTTGTGGCTACAAATGTGGTCGTAAGAATCAAATAAAAAGTCATTTAATAACTCACACTGACATAAAGGAGGTAAAGGGTTAA
Protein Sequence: MSECSDMERLVMVALLQGLISDSSNCFEIQTKDTESNLEEETLVQRRKAKTSGSKLQSRKISNYKSGNKPFMCEVCDYQSARKDKLKKHLKTHTGEKPFKCHTCEYKCALKVSLKKHLKTHTTEKTFECEVCGHRSARKDHLRDHLKTHTGEKPFKCDICEYKCARKDRLKRHLKTHTGEKPFKCEICDFKSARKDQLTVHLKTHSGENPFTCKICDKKLASKCSFKTHSKTHAREKSFTCEICGYKCPLRSTLNKHLIIHTGEKLFKCEICGYKCKRKVYLKSHLRTHTGEKPFKCEICDFKFTLKITLTNHLRTHSGEKPFPCEICHRKFARKSDVKDHLTIHTGEKPFACKICDMKFRCKRSLMRHLKTHTGEKPYKCEFCDYKCAHKNYLQLHLITHTVKKEFKCKNCDFKSEVKQLLKNHLKTHKSEKSFTCGICDFKCTRKESLKDHLRIHTGEKPFLCEICGYGCAVQRSLKDHLRTHTGEKPFNCVICSSKFALKSTLKRHLKTHTGEKPITCDICDYTCIEKQQLQQHLIKHTGEKLFKCAICDYQFARIAYLRDHLKIHTGEKPFTCEICEKKFRTSSNLRGHLKIHTGAKLFQCAICGYKCGRKNQIKSHLITHTDIKEVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292031;
90% Identity: iTF_01292031;
80% Identity: iTF_01292031;