Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:24139082-24140260[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.18 82 4.3 0.2 21 45 84 108 77 111 0.81

2 11 0.002 0.9 10.6 0.3 21 52 112 143 108 145 0.89

3 11 2 9.1e+02 0.9 0.2 21 44 140 163 138 167 0.74

4 11 0.012 5.2 8.1 0.0 21 52 168 199 158 201 0.82

5 11 1.5 6.7e+02 1.4 0.0 21 44 196 219 192 227 0.70

6 11 0.6 2.7e+02 2.6 0.1 21 46 224 249 220 255 0.72

7 11 0.018 8.3 7.5 0.1 21 45 252 276 249 279 0.89

8 11 0.023 11 7.1 0.2 21 48 280 307 276 311 0.84

9 11 0.0066 3 8.9 0.1 21 46 308 333 304 339 0.85

10 11 0.083 37 5.4 0.1 21 45 336 360 332 366 0.89

11 11 0.14 65 4.6 0.2 24 45 367 388 360 391 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.18	82	4.3	0.2	21	45	84	108	77	111	0.81
2	11	0.002	0.9	10.6	0.3	21	52	112	143	108	145	0.89
3	11	2	9.1e+02	0.9	0.2	21	44	140	163	138	167	0.74
4	11	0.012	5.2	8.1	0.0	21	52	168	199	158	201	0.82
5	11	1.5	6.7e+02	1.4	0.0	21	44	196	219	192	227	0.70
6	11	0.6	2.7e+02	2.6	0.1	21	46	224	249	220	255	0.72
7	11	0.018	8.3	7.5	0.1	21	45	252	276	249	279	0.89
8	11	0.023	11	7.1	0.2	21	48	280	307	276	311	0.84
9	11	0.0066	3	8.9	0.1	21	46	308	333	304	339	0.85
10	11	0.083	37	5.4	0.1	21	45	336	360	332	366	0.89
11	11	0.14	65	4.6	0.2	24	45	367	388	360	391	0.87

Sequence Information

Coding Sequence: ATGGAACGGATCGACCAAGTATCGGAACCTCCCGATAATTCTAGTAGCCATGAAATTAAAGTAGAAGATGTGAAGTTTAATTTAGAAGATTTACATCACTCGATAGACATCAAAGACGAGAGCGATGCAGAACAACTAGCACTGGAGAAACCAGTAAGAAAAACTAAAACCTCAAATTTTATTTGTCATTTTTGTGGTTATAAATATGAATGGAAATCATATTTAATAAGACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACGAAGAACAAATTTAAAAAATCATATAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTAACTGTAAATATGCACAAAGAGTAGCTTTAAAAAGACATTTAAAAATTCACACAGGCGAAAAACCTTTTTCTTGTCAGATTTGTGACTATAAATGTGCATACAGAACAACTTTAAAAAATCATTTAAAAACTCACACAGGTGAAAAACCGTTTGCTTGTGAGATTTGTGACTATAAAAGTGCACGAAAATCAAATTTAAAAGAACATTTAAAAGTTCACACAGGCGAAAAACCTTTTTCTTGTGGGATTTGTGATTATAAAAGTGCACATAGAAGTGATTTAAAAGTTCATTTAAGAACTCACACGGGCGAGAAACCTTTTGCTTGTGAGATTTGTGTCTATAAATGCTTACTAAGAAATGATTTAACAAAACATTTAAAAACTCACACAAACGAGAAACCTTTTGCTTGTGAGATTTGTGATTATAAATGTGCACTAAAAAATAATTTAAAAAGACATTTAAGAACTCACACAGGTGAGAAACCTTTTACTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGTACATTTAAAAGACCATTTAAAAACACACACAAACGAGAAACCTTTTGCTTGTGAGATTTGTGTCTATAAATGCGTACAAAGAGGAGATTTAAAAAGACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGGGGACATTTAAAAAAACATTTAAAAACTCACACAGGTGAGAAACTTTTTGCTTGTGAGATCTGTGATTATAAATGTGCTCAAAATAGATCTTTAAAACATCATTTAAAAAGTCACAATGCATAG
Protein Sequence: MERIDQVSEPPDNSSSHEIKVEDVKFNLEDLHHSIDIKDESDAEQLALEKPVRKTKTSNFICHFCGYKYEWKSYLIRHLKTHTGEKPFACEICDYKCARRTNLKNHIKTHTGEKPFACEICNCKYAQRVALKRHLKIHTGEKPFSCQICDYKCAYRTTLKNHLKTHTGEKPFACEICDYKSARKSNLKEHLKVHTGEKPFSCGICDYKSAHRSDLKVHLRTHTGEKPFACEICVYKCLLRNDLTKHLKTHTNEKPFACEICDYKCALKNNLKRHLRTHTGEKPFTCEICDYKCAQRVHLKDHLKTHTNEKPFACEICVYKCVQRGDLKRHLRTHTGEKPFACEICDYKCAQRGHLKKHLKTHTGEKLFACEICDYKCAQNRSLKHHLKSHNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292241;
90% Identity: iTF_01292241;
80% Identity: iTF_01292241;