Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:12059402-12061186[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.04 18 6.4 0.0 21 47 89 115 77 121 0.80

2 15 0.072 33 5.6 0.3 22 47 118 143 112 149 0.83

3 15 0.073 33 5.5 0.0 22 47 146 171 141 177 0.83

4 15 0.33 1.5e+02 3.4 0.0 11 45 162 197 161 200 0.82

5 15 0.91 4.1e+02 2.0 0.3 19 46 228 255 224 262 0.71

6 15 1.3 6e+02 1.5 0.1 21 45 258 282 247 289 0.79

7 15 0.24 1.1e+02 3.9 0.1 22 45 287 310 281 313 0.86

8 15 0.00051 0.23 12.4 0.5 22 51 315 344 310 347 0.83

9 15 6.1 2.8e+03 -0.6 0.1 22 33 343 354 338 368 0.67

10 15 1.6 7e+02 1.3 0.0 23 48 372 397 357 402 0.78

11 15 8 3.6e+03 -1.0 0.0 22 44 427 449 415 457 0.68

12 15 0.38 1.7e+02 3.3 0.0 21 46 454 479 440 485 0.73

13 15 0.0021 0.94 10.5 0.2 22 46 483 507 477 513 0.84

14 15 0.31 1.4e+02 3.6 0.0 22 47 511 536 506 542 0.82

15 15 0.045 20 6.2 0.0 11 45 555 590 551 593 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.04	18	6.4	0.0	21	47	89	115	77	121	0.80
2	15	0.072	33	5.6	0.3	22	47	118	143	112	149	0.83
3	15	0.073	33	5.5	0.0	22	47	146	171	141	177	0.83
4	15	0.33	1.5e+02	3.4	0.0	11	45	162	197	161	200	0.82
5	15	0.91	4.1e+02	2.0	0.3	19	46	228	255	224	262	0.71
6	15	1.3	6e+02	1.5	0.1	21	45	258	282	247	289	0.79
7	15	0.24	1.1e+02	3.9	0.1	22	45	287	310	281	313	0.86
8	15	0.00051	0.23	12.4	0.5	22	51	315	344	310	347	0.83
9	15	6.1	2.8e+03	-0.6	0.1	22	33	343	354	338	368	0.67
10	15	1.6	7e+02	1.3	0.0	23	48	372	397	357	402	0.78
11	15	8	3.6e+03	-1.0	0.0	22	44	427	449	415	457	0.68
12	15	0.38	1.7e+02	3.3	0.0	21	46	454	479	440	485	0.73
13	15	0.0021	0.94	10.5	0.2	22	46	483	507	477	513	0.84
14	15	0.31	1.4e+02	3.6	0.0	22	47	511	536	506	542	0.82
15	15	0.045	20	6.2	0.0	11	45	555	590	551	593	0.82

Sequence Information

Coding Sequence: ATGGTGGCTTTGTTACAGGGTCCTCCATCACATTCAAATCGTCTCTCCAAAAGTGAGAGTGACGAAATAGAATTGAATTTGGATAAGTTACATCATCATCCCGTTCATAGTCGAGAAGAGATTTCAGTTCGTTTTCAGAAGACAAAAACTGATTGTAATCCGCTTACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGAACTATGTGAATACAAAGCTGCAAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATGTGCTCAGAAGGGAAATCTAAAAAATCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTACAAATGTGCACAGAAGCAAAATTTAATACACCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTAAAATTTGTGACTTCAAATGTGCACAGAAGGGAACTTTGAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTAAAATTTGTGATCACAAATTTGCACTGAAGTCTAATTTAACAAAGCATTTAAGAACGCATTCAGGAGATATTCAGATGTTTCAATGTGAACTTTGTGACTACAAATCTGCAAGGAAAAATTATTTAAAAGTTCATTTAAAAAGGCATTCGGGCAATAAACCGTTTCAGTGTGGAATTTGTGACTATAGATGTGCACGGAAGGAACCTTTAGAAAGACATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTACAAATTTACACAGAAGCAACATTTAATAATCCATTTAAGAACACATTCAGGAGACAAACCGTTTCAGTGTGAAATTTGTAATTACAAATTTTCACAGAAACAAAATTTAATAATCCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTGCAAATTTGCACAGAAGCAAAATTTAAAAAGGCATTTAAGAACACATTCAGGAGATAAACCGTCTCAGTGTGAAATCTGTGACTACAAATGTACAACGAAGGGAAGTTTAAAACTTCATTTAAGAACACATTCAGGATATAAACCGTTTCAGTGTGGCATTTGTAATCGCAAATTTGCATGGAAGTCTAATTTAACAAACCATTTAAGAACGCATTCAGGAGTTAAACCGTTTCAATGTGAACTCTGTGACTACAAATTTACAACGAAGGGAAGTTTAAAACTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATCTGTGACTACAAATGTACAACGAAGGGAAGTTTAAAACTTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTAATTACAAATTTGACCGGAAGTCTAATTTAACAAGCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTTACTTCAAATGTGCACAGAGGGGAACTTTGAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTAATTACAAATTTGCATGGAAGCAAAATTTAAAAAACCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGAAATCTGTGACTACAAATTTACAATGAAGGGAACTTTAAAACTTCATTTAAGAACGCATTCAAGAGATAAAGCGTTTCAATGTGAACTCTGCGACTATAAATGTGCACAGAAGCGAAATTTAGATAAGCATTTAAGAACACATTCATGTTGA
Protein Sequence: MVALLQGPPSHSNRLSKSESDEIELNLDKLHHHPVHSREEISVRFQKTKTDCNPLTTPQISNYKFKCELCEYKAASKGGLKVHLRTHSGDKPFQCEICDYKCAQKGNLKNHLRTHSGDKPFQCEICNYKCAQKQNLIHHLRTHSGDKPFQCKICDFKCAQKGTLKRHLRTHSGDKPFQCKICDHKFALKSNLTKHLRTHSGDIQMFQCELCDYKSARKNYLKVHLKRHSGNKPFQCGICDYRCARKEPLERHLRTHSGDKPFQCEICNYKFTQKQHLIIHLRTHSGDKPFQCEICNYKFSQKQNLIIHLRTHSGDKPFQCEICNCKFAQKQNLKRHLRTHSGDKPSQCEICDYKCTTKGSLKLHLRTHSGYKPFQCGICNRKFAWKSNLTNHLRTHSGVKPFQCELCDYKFTTKGSLKLHLRTHSGDKPFQCEICDYKCTTKGSLKLHLRTHSGDKPFQCGICNYKFDRKSNLTSHLRTHSGDKPFQCEICYFKCAQRGTLKRHLRTHSGDKPFQCGICNYKFAWKQNLKNHLRTHSGDKPFQCEICDYKFTMKGTLKLHLRTHSRDKAFQCELCDYKCAQKRNLDKHLRTHSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292002;
90% Identity: iTF_01292002;
80% Identity: iTF_01292002;