Rful004459.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:20457811-20459014[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 50 5.0 0.0 22 52 72 102 64 103 0.90 2 11 0.26 1.2e+02 3.8 0.1 23 48 101 126 97 131 0.90 3 11 1.9 8.4e+02 1.1 0.2 21 52 129 160 125 162 0.77 4 11 1.4 6.4e+02 1.4 0.1 21 45 157 181 153 185 0.75 5 11 0.011 5 8.2 0.0 15 52 179 216 169 217 0.82 6 11 0.011 5.1 8.1 0.1 21 52 213 244 211 246 0.89 7 11 2.1 9.6e+02 0.9 0.1 22 46 242 266 238 273 0.81 8 11 2.6 1.2e+03 0.6 0.1 21 36 269 285 254 296 0.71 9 11 0.00077 0.35 11.9 0.1 11 45 286 321 281 324 0.80 10 11 0.0059 2.7 9.1 0.1 21 46 325 350 321 358 0.87 11 11 5.5 2.5e+03 -0.5 0.0 23 46 355 378 351 383 0.72
Sequence Information
- Coding Sequence
- ATGGTTAGAATTAATAATTCGGGAGGCATTCGGAAAACAAGAAAAAGTAACAATCTTAAAATTAAAACAGAACCAACTGAAGACATCAAAATCAGTTTAAAAGAACTTCATCATACAATCGACATTAAAGAGGAAGGCGACGATTTGATTGAAGAATGTGGATTGGATACTGAAGAAGGTGAATCCATTGGACAAGATCAATTGGATATTGGAGATAAACCCTTCGCATGTAGAATTTGTGACTGGAAATTTGCAGATAAGAAAAGTCTTAAAAAACATTTAAACATTCATACCGGTGTAAAGCCATTTGCTTGTGACGTTTGTGACTTTAAATGTACTAAAAAGGGAAACTTAAAACAACATCTCAGAATAATTCATTCAACTGGTGAGAGATTGTTTGCATGCAAGCTTTGTGACTATAGATATATACGTCGGTCGAGCTTAAATGTGCATTTAATACTTCATTCTGGTGAGAAACCGTTCGTGTGTAGCCTTTGCGACTATAAATGTATAGAGAAGGGAACGTTAAAAAAACATTTAAAAAGACATTCTGGCGAAAAACCGTTTAAGTGTAAATTTTGTGACTACAAATGTTCAGAAAATGGGAATTTAACCAGGCATTTGAAAATCCATACAGACGAGAAACCATATGCATGCGAAATTTGTAACTATAAAACCTCACAAAAATATAACTTAATGAATCATTTAAAAACTCATTCTTGTGATAAACCGTTTTCGTGCGAAATTTGTGACTACCAATGCACCGAAAAGGGAAGTTTAAAATCGCATTTAAAAATCCATACTGGGGAAAAAGCATTTACGTGTGAAATATGTGAATACAGATTTATTCACAGGGGAACCTTAAAAGTTCACTTAAGAACACATACCGGTGAGAAACCATTTACTTGTAAAATTTGTGACAAAAGTTTTGTACATCGAGAAAGCTTGAGAAGACATTTAAGGACTCATAGTGGCGAAAAGCCTTACGCTTGTGAAATCTGTGATTATAAATGTGCAGATAGTGCAAATTTAAAGACCCACTTAAGAATTCATACTGGCGAAAAGCGGTTTGTTTGTGCAATTTGCGACTACAAATCCATTACAAAGGGAAATTTAAACAAACATGTAAAAGTTCATAACAATAATAAATTGTGA
- Protein Sequence
- MVRINNSGGIRKTRKSNNLKIKTEPTEDIKISLKELHHTIDIKEEGDDLIEECGLDTEEGESIGQDQLDIGDKPFACRICDWKFADKKSLKKHLNIHTGVKPFACDVCDFKCTKKGNLKQHLRIIHSTGERLFACKLCDYRYIRRSSLNVHLILHSGEKPFVCSLCDYKCIEKGTLKKHLKRHSGEKPFKCKFCDYKCSENGNLTRHLKIHTDEKPYACEICNYKTSQKYNLMNHLKTHSCDKPFSCEICDYQCTEKGSLKSHLKIHTGEKAFTCEICEYRFIHRGTLKVHLRTHTGEKPFTCKICDKSFVHRESLRRHLRTHSGEKPYACEICDYKCADSANLKTHLRIHTGEKRFVCAICDYKSITKGNLNKHVKVHNNNKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292125;
- 90% Identity
- iTF_01292125;
- 80% Identity
- iTF_01292125;