Rful007405.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14820760-14821860[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.16 71 4.5 0.0 21 49 85 113 77 116 0.83 2 10 0.0048 2.2 9.3 0.1 21 51 113 143 110 144 0.86 3 10 0.0063 2.8 9.0 0.0 21 47 141 167 138 172 0.87 4 10 0.0009 0.41 11.7 0.6 21 52 169 200 166 203 0.89 5 10 6.2 2.8e+03 -0.6 0.0 22 45 198 221 195 224 0.82 6 10 0.14 63 4.6 0.4 21 45 225 249 218 252 0.85 7 10 0.0086 3.9 8.5 0.1 21 47 253 279 249 286 0.85 8 10 0.76 3.4e+02 2.3 0.3 21 45 281 305 277 312 0.72 9 10 0.066 30 5.7 0.1 21 47 309 335 302 340 0.85 10 10 0.29 1.3e+02 3.7 0.0 21 45 337 361 334 364 0.82
Sequence Information
- Coding Sequence
- ATGGAACGGATCGACGAAGTATCGGAACCCGATAATTCTAGTAGCCATGAAATTAAATTAGAAGATGTGAAGTTTAATTTAGAAGATTTGCATCACTCGATAGACATCAAAGACGAGATCGAAAGCGATGCAGAACAACTAGCACTGGATAAACCCGTAAGAAAAACTAAAAACTCAAATTTGATTTGTCAGTTTTGTGAATGTAAATGTGCAAGCAGCGAAGTATTAAAAAAACATTTAAGAACTCATACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAAAACGCATTTCAAAGATCATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTAAGATTTGTGACTATAAATGTGCACAAAAATCAGTTTTAAAAAGACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTAAGATTTGTAACTATAAATGTGCACAAAAAGGAAATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTAAGATTTGTAACTATAAATGTGCACAAAGATCAATTTTAAAAAGACATTTAGAAATTCACACAGGCGAGAAACCTTTTGCTTGTGCGAATTGTGACTATAAATGTGCACTAAAAGGAAATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGTGATTTGTGACTTTAAATGTGCACGAAGAACACATTTAAAAAGGCATTTAAGAACGCACGCAGGCGAGAAACCTTTTGCTTGTAAGATTTGTGACTATAAATGTGCACAAAGTACGCATTTAAAAACGCATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGTGATTTGTGACTATAAATGTGCACATAGATCATCTTTAAAAAATCATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGCATTTTTAAAAAAACATTTAAAAACTCACACAGGTGAGAAACCTTTTTCTTGTGGGATTTGTGACTATAAATGTCCACGAAAAGGAAATTTAAAAGTACATTTAAAAACTCACACTGGCGAGTAA
- Protein Sequence
- MERIDEVSEPDNSSSHEIKLEDVKFNLEDLHHSIDIKDEIESDAEQLALDKPVRKTKNSNLICQFCECKCASSEVLKKHLRTHTGEKPFACEICDYKCAQKTHFKDHLKIHTGEKPFACKICDYKCAQKSVLKRHLKIHTGEKPFACKICNYKCAQKGNLKEHLKTHTGEKPFACKICNYKCAQRSILKRHLEIHTGEKPFACANCDYKCALKGNLKEHLKTHTGEKPFACVICDFKCARRTHLKRHLRTHAGEKPFACKICDYKCAQSTHLKTHLRTHTGEKPFACVICDYKCAHRSSLKNHLRTHTGEKPFACEICDYKCAQRAFLKKHLKTHTGEKPFSCGICDYKCPRKGNLKVHLKTHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292412;
- 90% Identity
- iTF_01292412;
- 80% Identity
- iTF_01292412;