Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:6508528-6509673[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.014 6.1 7.9 0.1 21 47 85 111 77 116 0.85

2 7 0.096 43 5.2 0.2 21 45 113 137 109 144 0.82

3 7 0.026 12 7.0 0.1 21 45 169 193 161 196 0.87

4 7 0.0027 1.2 10.1 0.4 21 52 197 228 193 230 0.86

5 7 0.03 14 6.8 0.2 21 45 267 291 260 294 0.79

6 7 0.27 1.2e+02 3.7 0.1 21 43 295 317 291 322 0.72

7 7 0.0002 0.093 13.7 0.1 21 47 323 349 311 356 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.014	6.1	7.9	0.1	21	47	85	111	77	116	0.85
2	7	0.096	43	5.2	0.2	21	45	113	137	109	144	0.82
3	7	0.026	12	7.0	0.1	21	45	169	193	161	196	0.87
4	7	0.0027	1.2	10.1	0.4	21	52	197	228	193	230	0.86
5	7	0.03	14	6.8	0.2	21	45	267	291	260	294	0.79
6	7	0.27	1.2e+02	3.7	0.1	21	43	295	317	291	322	0.72
7	7	0.0002	0.093	13.7	0.1	21	47	323	349	311	356	0.82

Sequence Information

Coding Sequence: ATGGATAATTCGAATAATTCAAATAGCGGTTATAAAATTAAAATAGAAGATTTGGATGACGTGAAGTGCAATTTAGAAGATTTGCATCATTCGATAGACATTAAGGAAGATAGCGATTATGAAGAAGAGCATAAATGTGGTTTGAACTTTCAGTTACCATCTAAAACTAACAAGAAAAAATTTGCTTGTCAATTTTGTGACTATAAATCTGCACAACCGTCAGTTATACAACGGCATTTAAGAATTCACACAGGTGAGAAGCCATTTACTTGTGAAATTTGCGGTTTTAAATGTGCACGAAGTTCAACGTTAAAAGAGCATTTGAAAACGCACACAGGTGAGAAACCATTTGCTTGTGAAATCTGCGATTACAAATGTTCACGAAATTCAAGGTTAAAAGATCATCTGAAAGCTCACACTGGTGAGAAGCGACTTGCTTGTAAATTTTGTGACTATAAGTGTGCACAACAGTCAGCTTTACAGAATCACTTAAGAACACACACCGGCGAAAAACCATTTTATTGTCCAATTTGTGACTATCAGTTTTCACAAAAAGCACATTTAACCGAACATTTAAAAACTCATACTGGCGAAAAGCCATTTTTTTGTGAAATTTGTGACTATAAGTGTTCGCAAAGAGCGCATTTAAGACGCCATCTAAAAACCCACACTGGTAAAAAGCCGTCGCTAAAAAGGCAATTAAAAACTCCCCTGGGCAAAAAATCATTTGTTTGCGACATTTGTTGCTATAAATTTGGAAGAAAATCACATTTAACAAGCCATATGAAAACCCATACCGGTGAGAAACCGCATGCTTGTGAAATTTGTGGTTACAAATGCATACAAAAGTCATCGTTAAAAAAACATTTAAGAACACACACCGGCGAGAAACCGTTTACTTGTGCAATTTGTGGGCTTAAATATATAGAAAAAGCAACGTTAAAAAAACATATAAGAACACACACCGGCGAAAAACCGTTCGATTGTTCTATTTGCGACTATAAATGTGCACAAAAATCTAATTTAAAACGACACTTAAAAATTCACGCTCACAAGATTCCGTTTGTTTGTGAATTTTGTGACTCTACATACGTGCATGAATTTCTTTTAAAAAGGCACTTGAAAACTCATATTAAATGTTCCTGA
Protein Sequence: MDNSNNSNSGYKIKIEDLDDVKCNLEDLHHSIDIKEDSDYEEEHKCGLNFQLPSKTNKKKFACQFCDYKSAQPSVIQRHLRIHTGEKPFTCEICGFKCARSSTLKEHLKTHTGEKPFACEICDYKCSRNSRLKDHLKAHTGEKRLACKFCDYKCAQQSALQNHLRTHTGEKPFYCPICDYQFSQKAHLTEHLKTHTGEKPFFCEICDYKCSQRAHLRRHLKTHTGKKPSLKRQLKTPLGKKSFVCDICCYKFGRKSHLTSHMKTHTGEKPHACEICGYKCIQKSSLKKHLRTHTGEKPFTCAICGLKYIEKATLKKHIRTHTGEKPFDCSICDYKCAQKSNLKRHLKIHAHKIPFVCEFCDSTYVHEFLLKRHLKTHIKCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292194;
90% Identity: iTF_01292194;
80% Identity: iTF_01292194;