Rful005889.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:20309404-20310549[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0052 2.3 9.2 0.2 20 45 126 151 121 155 0.85 2 9 0.0035 1.6 9.8 0.0 22 47 156 181 153 187 0.89 3 9 2 8.9e+02 1.0 0.1 26 45 188 208 182 215 0.82 4 9 0.086 39 5.3 0.0 21 48 212 239 206 244 0.79 5 9 0.25 1.1e+02 3.9 0.0 20 44 239 263 236 268 0.81 6 9 0.016 7.1 7.7 0.1 21 52 268 300 263 300 0.84 7 9 0.16 73 4.4 0.1 21 44 297 320 292 329 0.82 8 9 0.4 1.8e+02 3.2 0.1 24 52 328 356 321 358 0.81 9 9 1.3 6e+02 1.5 0.0 23 43 355 375 349 379 0.84
Sequence Information
- Coding Sequence
- ATGGCTCAAGTTTTTTTGGAAGATCAGCAACATTTAGGAGCAACTAGCGACATTTCGTCAGTGCAGTGTAATTTAATGAGGGATTCAGAAATTAAAAAAGAAAAATTGGACGATCTACAATTTAGCTACGATCCAGGAACAGTTTTTGTTAAATCTGAAGAGAATGAAGAAGGCGAATTAAAGCAATTTGACATTGTTAAGATAGATGAATCGTTTGGTTCCGAAATTTGCGGCTATGGAAGTTCTCAAGGAAGAAATTGGGAAGATAATTCGGGTAAAACTCACGTTAATGAAAAACAATTTGCCTGTGAAGTTTGGGACTGTAAATCATTGACCAAGCGCACTTTGAAACAGCATATTATAAAAACTTATACCAAAAGTAAAAAAATTTTTACTTGTAATATTTGTGATTATAATTCAATTCGCAGAAGTAATTTGGAACGACACATAAAAACCCATTTAGGTGAAAAACCGTTTACTTGTGCAGTTTGCAACCACAAATTTGTTGATAAACTCAATTTGACACGGCATTTGAAAATACATTTAGTCAAAAAATTATTCACTTGTGGAATTTGCAACTATAAATTAATAGGTAAAATCACCAAATTTGAACGACATGTGAGAACTCATACTGGCGAAAAACCATTTTCTTGCGATATATGTGACTATAAATCGATAGACGAATCCAGTTTACGACAGCACATGAAAACTCATTCCAGCGAAAAACCGTTTTGGTGCGAAATGTGTGATTATAAATCATTACGCAAACTTAATTTAGAACGCCATATTAGAACTCACACCGGTGAAAAGCCATTCCGATGTGACATTTGTGACTATAAAGCTTTGGACACAATCAATTTGAAACGTCATATTATGCAAACTCACGTAAGTGCAAAACCATTTTCCTGTGAAATTTGCGACTACAGCACAATAGCCAAAAGTATTTTAAAACGGCACATGAGAACTCATACAGGGGAAAAATCGTTTAGGTGTAAAAAATGCGATTATAAAGCAGCGCAGAAATCGAATTTGGAACGGCATGTGAGAACCCATACCGGGGCTAAACCATTCATTTGCGATATTTGTGACTATAAATCTTTAGACGGAGCCAATTTGAAACGGCATAAGAAAACGCATGCAGCCTAA
- Protein Sequence
- MAQVFLEDQQHLGATSDISSVQCNLMRDSEIKKEKLDDLQFSYDPGTVFVKSEENEEGELKQFDIVKIDESFGSEICGYGSSQGRNWEDNSGKTHVNEKQFACEVWDCKSLTKRTLKQHIIKTYTKSKKIFTCNICDYNSIRRSNLERHIKTHLGEKPFTCAVCNHKFVDKLNLTRHLKIHLVKKLFTCGICNYKLIGKITKFERHVRTHTGEKPFSCDICDYKSIDESSLRQHMKTHSSEKPFWCEMCDYKSLRKLNLERHIRTHTGEKPFRCDICDYKALDTINLKRHIMQTHVSAKPFSCEICDYSTIAKSILKRHMRTHTGEKSFRCKKCDYKAAQKSNLERHVRTHTGAKPFICDICDYKSLDGANLKRHKKTHAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292695;
- 90% Identity
- iTF_01292695;
- 80% Identity
- iTF_01292695;