Rful005694.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:96450833-96455891[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 60 4.7 0.0 21 45 115 139 110 144 0.77 2 11 0.018 8.2 7.5 0.1 25 52 147 174 139 176 0.82 3 11 0.31 1.4e+02 3.6 0.1 21 46 199 224 188 230 0.84 4 11 7.7e-05 0.035 15.1 0.1 11 52 245 286 239 287 0.84 5 11 0.27 1.2e+02 3.7 0.2 20 46 282 308 279 314 0.82 6 11 1 4.6e+02 1.9 0.0 21 47 311 337 307 344 0.81 7 11 4.1 1.8e+03 -0.0 0.0 21 51 339 369 333 371 0.83 8 11 0.04 18 6.4 0.0 22 52 368 398 356 399 0.86 9 11 0.51 2.3e+02 2.9 0.0 21 46 395 420 393 426 0.86 10 11 1.2 5.4e+02 1.7 0.1 21 46 423 448 419 454 0.73 11 11 2.1 9.4e+02 0.9 0.1 22 45 452 475 448 481 0.77
Sequence Information
- Coding Sequence
- ATGGAGAATTTTATACTTCTGACCAAACTTGAAGAACCTATCGATGGTTTGCGAGCTCCTACTAACGATTATGAAATGGAGGGCACGGAAGTTAAACTAGAAGATTTGCACCACTCCATTGATATTAAGGAAGAGGACGATTCAAATTATTTAGAATATCAAGAAGATATTAATGAGTCGCTGTCATTAGTAATTGTAGCTTTGTTACAGGGCCCTCTGTGGCATTCAAGTAGCCCCTTCCAAATTAAGAGAGAAGAAGAGGAATTTAACTTGGAAGATTTCAATTATCATTCCATTAACATTCAAGTAGAGACTGCAGTTCACGTTCAGAAAGCAGAAACAAGTGGTAGACCGTTTACGTGTGATATTTGTGCGTACAAATCTGCGCGAAAAGGAGATTTAAAAAAGCATTTAAAAACGCATACAGGCGAGAAATTGTTTAAGTGTGAAATTTGTAACTACAAAAGTGTACAAAAGACTAATTTAAAACGCCATTTAAAAACACATAAAGACGAAAAGCCGTATATATGTGAAGATTGTGACTACAAATGCGCAAATAAGGGAATTTTAAAGTCTCATTTAAAAAGTCATACCAGCAAGAAATTGTTTACATGTGAAATTTGTAACTTTAGCTGTGTAAGTAAGAGAGATTTAAAAATTCATTTAAGAATTCATCCAGACGAGAAATGTTTTAAGTGTGAAATTTGCGACTACAAATCTGGACGAAAAGATGGTTTAAAAAAACATTTAAAAAGACACTCTGGCGAGAAACCTTTTAAATGTGAAATTTGTCCTTACAAATCTGTAGATAACAGAAATTTAAAACGGCATTTGAGAATTCATGCCAGTGAGAAACCTTTAAAATGTGAGATTTGTGATTACAAATGTGCACATACGGAAAGTTTAAAGTATCATTTAAAAACACATGCAGGTGAGAAACCGTATATGTGTGAAATTTGTGCTCAAACATACGCAAATAAAGGAAGTTTACAGACTCATTTAAAGACTCATACAGGTGAAAAACCGTTCATTTGTAAATTTTGCGATTACAAATCTAAAGAAAAAGGAAGTTTAAAAAATCATTTAAAAATCCACACAGGCGATAAACCGTTTAAGTGTGGAATTTGTAACTTCACAGCCGTAAATAAAGGAAATTTAAGAACTCACTTAAGGATTCATACAGGCGAGAAACCATTTAAGTGTGAATATTGCGATCACAAATCTAGACGAAACGAAGATTTAAAAAAGCATTTAAGAACTCATACCGGCGAGAAACCATTCAAATGTGAAATTTGTGATTATAAATGTGCACGAAAAGAACCTTTAAAAAATCATTTAAAAACTCATACAGGCGACAAACCGTATAAGTGTAAAATTTGTGACTACAAATGTATACAAAAAGGAAGTTTAAAAATTCATTTAAAAACTCATAGAAAGCTGAACCAGTTTTAA
- Protein Sequence
- MENFILLTKLEEPIDGLRAPTNDYEMEGTEVKLEDLHHSIDIKEEDDSNYLEYQEDINESLSLVIVALLQGPLWHSSSPFQIKREEEEFNLEDFNYHSINIQVETAVHVQKAETSGRPFTCDICAYKSARKGDLKKHLKTHTGEKLFKCEICNYKSVQKTNLKRHLKTHKDEKPYICEDCDYKCANKGILKSHLKSHTSKKLFTCEICNFSCVSKRDLKIHLRIHPDEKCFKCEICDYKSGRKDGLKKHLKRHSGEKPFKCEICPYKSVDNRNLKRHLRIHASEKPLKCEICDYKCAHTESLKYHLKTHAGEKPYMCEICAQTYANKGSLQTHLKTHTGEKPFICKFCDYKSKEKGSLKNHLKIHTGDKPFKCGICNFTAVNKGNLRTHLRIHTGEKPFKCEYCDHKSRRNEDLKKHLRTHTGEKPFKCEICDYKCARKEPLKNHLKTHTGDKPYKCKICDYKCIQKGSLKIHLKTHRKLNQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292119;
- 90% Identity
- iTF_01292119;
- 80% Identity
- iTF_01292119;