Rful008963.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:9795053-9796465[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.02 8.9 7.4 0.0 21 47 106 132 99 137 0.86 2 7 0.23 1e+02 4.0 0.0 21 44 134 157 129 162 0.90 3 7 0.26 1.2e+02 3.8 0.3 21 46 190 215 182 227 0.87 4 7 0.014 6.2 7.9 0.0 21 45 246 270 243 279 0.86 5 7 0.027 12 6.9 0.0 21 44 358 381 344 384 0.90 6 7 0.022 9.8 7.2 0.0 22 44 385 407 382 412 0.91 7 7 1.2 5.4e+02 1.7 0.0 26 47 417 437 409 443 0.82
Sequence Information
- Coding Sequence
- ATGGATCAAAGATTCGTACAGGATTTTGGAAACAAATTCCAAACTACTGCAGTTACCACAATTGAAATTAAAACAGAAGTGGACGACCACATCGATGTCAAGTTGGAAAACCTGCATCATTCAATAGACATAAAAGATGAAACTTCCATTCTCGAACCTGAAGTGGATGGCCAATATGAAGGTGAAATATTCCCACAACTCCTAAATCATTCAAAAGTAATCCATTGTGATACCAAAGGTTTATTTGAATGTGCAATTTGTGACTACAAATCTTCAAAATTGGGATATTTCAGAAAGCATTTAAAGGTTCATACCGGCGAAAAACCATACACCTGTGAAATTTGTGATCTTAAAATTTCAACGAAAGGGAACCTTAAAATTCATCAGAAAATCCACACCGGGGAGAAACCGTTCGAATGTGAAATTTGTGGTGCTAAATTTATCCAAAAAGGTGCTTTAAAAATTCATTTATGGAAACATTCAGGAGACGAGCCTTTTCGATGTGACCTTTGTGCCTTTAAATGTTCCTTAAAATCTGATTTTAGAAATCACCAGAGGGTCCATACCGGAGAGAGACCCTTCGGTTGTGCAATTTGTAACCGTAAATTTTCAACGAAGTCGCATCTGCGAGTTCACCTGAAGATTCATTCCGAGGAAAAAGACTTTGCGTGTAAAATTTGTAGCTATAAAACTTGGAGTAAAAAAAGTTTTGAAGTACATTTAATGACCCATTCCGGGGAGAGACCTTTTGCATGTGAAATATGCGATTCTAAATTTTATCAAAAAAGGGGTTTAAAAGTTCATTTAATAACACATACAGGAGAAAAACCTTTTTTATGCAAGATTTGTGGTTTTAAAACCGGTTATAAAACGACTCTAACAGCGCACCTAAAAGGTCATACCGGGGAGAAATTTGCTTGTGAGTTTTGTGGCTGTAAGTATACGAAAAAGCATAATTTGAATGTTCACGTAATGACTCATCTTACGGGGAAAAAACGCTTTTCGTGCAATCTTTGTGACTTCGGATTTAACCACAAAAAAGGTTTGAAATCTCATTTAATGACTCACACCGGGGAAAAACCCGTTTCTTGCGAAATTTGCGACTATAAATGTAGATCAAAGTCAGATTTGAAAAAGCACTTAATGACCCACGAGAAACCTTGGGGGTGCCACATTTGTGACTCGAAATTTAGACACAAAAGGGAGTTAAATATGCATTTAATGGCTCACAAGGGCGAGAGACTTTTCGAATGTGATCTTTGTGGGGCTAAATTGAAGCAAAAAGCAGGATTAAAAATTCATTTGATAAAACATACGGGCAAAAAAGCCTTCGCTTGTGAATTTTGTGACTATAAATCCCATCGAAAGAATCATTTAGAATCGCATTTAAATACTCATCGCAAAGATCAGTAA
- Protein Sequence
- MDQRFVQDFGNKFQTTAVTTIEIKTEVDDHIDVKLENLHHSIDIKDETSILEPEVDGQYEGEIFPQLLNHSKVIHCDTKGLFECAICDYKSSKLGYFRKHLKVHTGEKPYTCEICDLKISTKGNLKIHQKIHTGEKPFECEICGAKFIQKGALKIHLWKHSGDEPFRCDLCAFKCSLKSDFRNHQRVHTGERPFGCAICNRKFSTKSHLRVHLKIHSEEKDFACKICSYKTWSKKSFEVHLMTHSGERPFACEICDSKFYQKRGLKVHLITHTGEKPFLCKICGFKTGYKTTLTAHLKGHTGEKFACEFCGCKYTKKHNLNVHVMTHLTGKKRFSCNLCDFGFNHKKGLKSHLMTHTGEKPVSCEICDYKCRSKSDLKKHLMTHEKPWGCHICDSKFRHKRELNMHLMAHKGERLFECDLCGAKLKQKAGLKIHLIKHTGKKAFACEFCDYKSHRKNHLESHLNTHRKDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292202;
- 90% Identity
- iTF_01292202;
- 80% Identity
- iTF_01292202;