Rful009080.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:13047189-13048340[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.59 2.6e+02 2.7 0.0 22 45 71 94 67 97 0.87 2 9 0.0067 3 8.9 0.1 21 46 98 123 94 131 0.80 3 9 0.016 7.3 7.6 0.1 18 46 150 179 140 185 0.82 4 9 0.011 5.2 8.1 0.1 21 45 210 234 206 237 0.91 5 9 0.11 49 5.0 0.2 21 45 238 262 234 265 0.85 6 9 0.0013 0.58 11.2 0.1 21 51 266 296 262 297 0.87 7 9 0.022 9.7 7.3 0.3 21 45 294 318 292 322 0.87 8 9 0.047 21 6.2 0.2 21 46 322 347 318 353 0.81 9 9 0.78 3.5e+02 2.3 0.1 21 45 350 374 346 379 0.80
Sequence Information
- Coding Sequence
- ATGAGCGACATGAGTAAACTTTTAGAAACTCCAAACAATACAATCAGCAGTTGTGAAATTAAAACGGAAAAGCTGGAAGATGTGAAGTTTAACATGGAAGATCTGCATCATTCGATCGATATTAAAGAGGAGTGGGATGCTGAAGAAGTAGCACAGGGAAAATTTGAAAGAAAGGACGCTTTAAAACTGCAGTTAGATACTCCTAAGGACAACAAACCATTTGGTTGCAAAATTTGTGCCTATAAATTTGCAAATGATGCAGGTTTAAAAAGGCATTTGAAGACTCACACCGGCGAAAAACCATTTACTTGTGAAATTTGTGGCTATAAATGTGCGAGAAAATCAAATTTAAAAATTCATTTGACGGCCCACACCGGCGAGAAACCTTTTGAATGTAAAGAATGTGGTTATAAATGTGCACGTCCATCAAATTTTAAAACTCATTTAAAAAGTCACAGTTATGGTCAACCGTTTATTTGTGAAGTTTGTGACTGTAAATGCTCAAATAAAAAAAATTTAAAGATGCATTTAAAAATCCACATGAGTGAAAAGCGGTTTGGATGTAGAGAATGTGATTACAAGTGTACCCTCAAATCAAGTTTAAAAATGCATTTAAAAACTCACACCGGCGAAAAACCGTTTGCCTGTGAAGTTTGTGACTATAAATGTGCACAGAAACCAAATTTAGAACGGCATTTAAAAACGCACACCGGCGAAAAACCATTCACTTGTGTACTTTGCCACTACGAGTGTGCAGAAAAATCAAGTTTAACACGGCATTTAAGAACCCACACCGGGGAAAAACCGTTCAGTTGTGAAATTTGTTACTGTAAATTTACACAAATAGGTCATTTACAAATGCATTTAAAAATCCACACCGGCGAGAAACCGTTTTCGTGTCCAGAATGTGATTACAAATGTGCGCGCCAGTCGAATTTAAAAATTCATTTGAGAACTCACACCGGGGAGAAGCCTTTCACATGTGAAATTTGTGGCTGTAAATGTACACGTAAATCAAGTTTAAAAATGCATTTGAAAACTCACACCGGGGAGAAGCCGTTTGCTTGTGAAATTTGCAATTTTACATCGGCACGTAAAGCAAGTTTACAAAATCATTTGAAAACTCACTCTGGAAAACATTGGCGTCGTTAG
- Protein Sequence
- MSDMSKLLETPNNTISSCEIKTEKLEDVKFNMEDLHHSIDIKEEWDAEEVAQGKFERKDALKLQLDTPKDNKPFGCKICAYKFANDAGLKRHLKTHTGEKPFTCEICGYKCARKSNLKIHLTAHTGEKPFECKECGYKCARPSNFKTHLKSHSYGQPFICEVCDCKCSNKKNLKMHLKIHMSEKRFGCRECDYKCTLKSSLKMHLKTHTGEKPFACEVCDYKCAQKPNLERHLKTHTGEKPFTCVLCHYECAEKSSLTRHLRTHTGEKPFSCEICYCKFTQIGHLQMHLKIHTGEKPFSCPECDYKCARQSNLKIHLRTHTGEKPFTCEICGCKCTRKSSLKMHLKTHTGEKPFACEICNFTSARKASLQNHLKTHSGKHWRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292232;
- 90% Identity
- iTF_01292232;
- 80% Identity
- iTF_01292232;