Rful004792.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14559585-14561021[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.081 37 5.4 0.0 21 47 86 112 82 117 0.77 2 13 0.0038 1.7 9.7 0.2 21 52 114 145 110 146 0.88 3 13 2.6 1.2e+03 0.6 0.2 21 44 142 165 140 169 0.74 4 13 0.023 10 7.2 0.0 21 52 170 201 166 202 0.81 5 13 1 4.5e+02 1.9 0.0 21 44 198 221 196 224 0.87 6 13 0.053 24 6.0 0.1 21 51 226 256 221 258 0.84 7 13 0.15 68 4.5 0.2 21 45 254 278 250 281 0.85 8 13 0.023 11 7.1 0.2 21 48 282 309 278 313 0.84 9 13 0.079 36 5.4 0.2 21 45 310 334 307 337 0.76 10 13 0.0065 3 8.9 0.5 21 52 338 369 335 370 0.88 11 13 0.0026 1.2 10.2 0.0 21 52 394 425 384 427 0.82 12 13 1.8 8.2e+02 1.1 0.2 21 44 422 445 418 449 0.74 13 13 0.029 13 6.8 0.1 21 45 450 474 439 477 0.88
Sequence Information
- Coding Sequence
- ATGGAACGGATCGACCAAGTATCGGAACCTCCCGATAATTCTAGTAGCCATGAAATTAAAGTAGAAGATGTGAAGTTTAATTTAGAAGATTTACATCACTCGATAGACATCAAAGACGAGAGCGAGAGCGATGCAGAACAACTAGCACTGGAGAAACCAGTAAGAAAAACTAAAACCTCAAATTTTATTTGTCAGTTTTGTGGTTATAAATATGAATGGAAATCATATTTAATAAGACATATAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATCTGCACGAAGAACAAATTTAAAAAACCATTTAAAGACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTGTAAATATGCACAAAGAGTAGCTTTAAAAAGACATTTAAAAATTCACACAGGCGAAAAACCTTTTTCTTGTCAGATTTGTGACTATAAATGTGCATACAGAACAACTTTAAAAAATCATTTAAAAACTCACACAGGTGAAAAACCGTTTGTTTGTGCAATTTGTGACTATAAAAGTGCACGAAAATCGAATTTAAAAGATCATTTAAAAGTTCACACAGGCGAAAAACCTTTTTTTTGTGAGATTTGTGATTATAAAAGTGCACATAAAAGAGATTTAAAAGTACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGTCTATAAATGCGTACAAATAAATGATTTAACAAAACATTTAAAAACTCACACAAACGAGAAACCTTTTGCTTGTGAGATTTGTGATTATAAATGTGCAGAAAGAGCAAAGTTAAAAAGACATTTAAGAACTCACACAGGTGAGAAACCTTTTACTTGTGAGATTTGTGGCTATAAATGTGCACAAAGAGTACAATTAAAAGAACATTTAAAAACACACACAAACGAGAAACCTTTTACTTGTGAGATTTGTGTCTATAAATGTGCAAGGAAGGCATCTTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCACAAAGAATAGCTTTAAAAAGACATTTAAAAATTCACACAGGCGAAAAACCTTTTTCTTATCAGATTTGTGACTATAAATGTGCACATAGAACAACTTTAAAAGATCATTTAAAAACTCACACAGGCGAGAAACCTTTTGCGTGTGAGATTTGTGGTTATAAATTTGCAAGAAAAGTAAATTTAAAACGTCATTTAAGAATTCACACAGGTGAGAAACCTTTTTTTTGTGAGATTTGTGACTATAAATGTGCACGAAGAGGGGATTTAAAACAGCATTTAAGAACACACACAGGCGAGAAACCTTTTTCTTGTGAGATCTGTGATTATAAATGTTCTCAAATTAGATCTTTAAATCATCATTTAAAAAGTCACAATGCATAG
- Protein Sequence
- MERIDQVSEPPDNSSSHEIKVEDVKFNLEDLHHSIDIKDESESDAEQLALEKPVRKTKTSNFICQFCGYKYEWKSYLIRHIKTHTGEKPFACEICDYKSARRTNLKNHLKTHTGEKPFACEICDCKYAQRVALKRHLKIHTGEKPFSCQICDYKCAYRTTLKNHLKTHTGEKPFVCAICDYKSARKSNLKDHLKVHTGEKPFFCEICDYKSAHKRDLKVHLRTHTGEKPFACEICVYKCVQINDLTKHLKTHTNEKPFACEICDYKCAERAKLKRHLRTHTGEKPFTCEICGYKCAQRVQLKEHLKTHTNEKPFTCEICVYKCARKASLKEHLKTHTGEKPFACEICNYKCAQRIALKRHLKIHTGEKPFSYQICDYKCAHRTTLKDHLKTHTGEKPFACEICGYKFARKVNLKRHLRIHTGEKPFFCEICDYKCARRGDLKQHLRTHTGEKPFSCEICDYKCSQIRSLNHHLKSHNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292241;
- 90% Identity
- iTF_01292083;
- 80% Identity
- iTF_01292083;