Rful006577.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:4631410-4632534[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.75 10.8 0.4 21 46 66 91 61 100 0.82 2 10 6.3 2.9e+03 -0.7 0.0 26 46 99 119 95 125 0.82 3 10 0.036 16 6.5 0.0 21 47 122 148 111 154 0.85 4 10 1.6 7.1e+02 1.3 0.2 21 46 150 175 146 181 0.75 5 10 0.36 1.6e+02 3.3 0.6 18 44 174 201 164 204 0.74 6 10 8.4e-05 0.038 15.0 0.1 20 52 205 237 198 239 0.88 7 10 0.0014 0.65 11.0 0.0 21 45 262 286 258 294 0.87 8 10 3 1.3e+03 0.4 0.1 21 33 290 302 286 316 0.72 9 10 0.0077 3.5 8.7 0.1 21 51 318 348 311 349 0.83 10 10 0.07 32 5.6 0.0 21 45 346 370 344 373 0.90
Sequence Information
- Coding Sequence
- ATGGAAGCTCATAATTTAATTAACGGAATTAAAACCGAAGATGCGGCGGACGTGAAATTTATTTTGGAAGAATTACACCATTCAATTGACATCAAAGAAGAGAACGAAACCGAACAATTGACACAGGAAATACCCCCAAAAAAATTTGACAGTGAAGATGAAGGTTATTTTAAAAGCAATTTTGAAGTTTCCACCAACGAAAATTTATTTGTTTGCGCAATTTGCTACTGTAAGTTTGTAGATAAACGCCGTTTGAGGAATCATTTAAAAACACACTACGACGGAAAGCATTTTTCTTGTAAAATTTGTGACTATAAATGCAATCAAAAGGGCCAGTTAAAAATTCATCTCAGAACCCATACCGGGGAAAAGCCGTTTTTCTGTGAAATATGTGACTATAAGTGTAGCCAGAAAGGAAACCTAAAACTTCATTTAAGGACCCACACCGGCGAGAAACCATTTTCTTGTGAAATTTGTGACTATAAATGTTCCTCCGCGGGTAGTTTAAAAACACACGTAAGAATTCACTCCGGCGAAAAACCATTTTCTTGTAACATTTGTAACTATAAATGTAGCCAAAGAGAACGACTAAAAATTCATGTAAGGTCCCACACTGGCGAGAAGCCTTTTTCTTGTGAAATTTGCGACTGTAAGTTTTCCCAAGCGACCAGTTTAAAGCGCCATTTAATAATTCACACCGGAGCAAAACCGTTTTCTTGTAAAATATGTAATTATAAGTGTTTTTTTGCGGGATATTTAAAAGAGCATTTAATAACTCACTCCGGCGAGAAACCATTTTCCTGTAAAATTTGTAAACTGACGTTTTCCCAAGCGAACAGTTTAAAGCGCCATTTAATAGCTCACACTGGAGAAAAACCGTTTTCGTGTAAAATTTGTGATTATAAATGTTCCTTTGCGGGATATTTGAAAGACCACTTAAAAACTCACTCTGACGAAAAACCGTTTTGGTGTAAAATTTGTGACTTTAAATGTGTACGTAAATCTCGCTTAGCGAGGCACTTAAAAATTCATACAGGCGAGAAGCCGTTTTCCTGTGAAATTTGTTGCTCAAAATTTGCAGAAAAGTCGGATTTAAAGAGGCATTTCAAAACTCACAACCGTTAA
- Protein Sequence
- MEAHNLINGIKTEDAADVKFILEELHHSIDIKEENETEQLTQEIPPKKFDSEDEGYFKSNFEVSTNENLFVCAICYCKFVDKRRLRNHLKTHYDGKHFSCKICDYKCNQKGQLKIHLRTHTGEKPFFCEICDYKCSQKGNLKLHLRTHTGEKPFSCEICDYKCSSAGSLKTHVRIHSGEKPFSCNICNYKCSQRERLKIHVRSHTGEKPFSCEICDCKFSQATSLKRHLIIHTGAKPFSCKICNYKCFFAGYLKEHLITHSGEKPFSCKICKLTFSQANSLKRHLIAHTGEKPFSCKICDYKCSFAGYLKDHLKTHSDEKPFWCKICDFKCVRKSRLARHLKIHTGEKPFSCEICCSKFAEKSDLKRHFKTHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292367;
- 90% Identity
- iTF_01292367;
- 80% Identity
- iTF_01292367;