Rful012630.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996557.1:38190186-38195494[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0002 0.0056 17.9 0.1 3 23 763 783 762 783 0.98 2 10 3.7 1.1e+02 4.4 0.6 1 23 785 807 785 807 0.97 3 10 0.088 2.5 9.6 1.2 1 23 828 850 828 850 0.98 4 10 0.0037 0.11 13.9 5.0 1 23 856 878 856 878 0.99 5 10 2.1 60 5.2 3.7 1 23 886 909 886 909 0.97 6 10 7.1e-05 0.002 19.3 1.9 1 23 1021 1043 1021 1043 0.98 7 10 0.00022 0.0065 17.7 1.7 2 23 1051 1072 1050 1072 0.97 8 10 0.015 0.42 12.0 4.0 1 23 1078 1100 1078 1100 0.98 9 10 0.0008 0.023 16.0 1.8 1 23 1106 1128 1106 1128 0.98 10 10 0.38 11 7.5 0.2 1 23 1134 1156 1134 1156 0.97
Sequence Information
- Coding Sequence
- ATGAGTCAAGTTTGTAGAACGTGCTTAAAAATTGTAGAAAACAAATCTCTAGTATTTAATATTGAAGTTAAAGAACCTACACATGACATTGTCCATATAAAAGCAAAATTAGAAGCATGTGTACCAGAAATCGTCTTAAATCGTGTAAAGGACTCCGTTATATGTAATTATTGCCTCTGTGCTTTAAACACAGCTTATGATTTTAAAACAAAATGTCTTGAAAGTGAGAAGAAAATTTATCACTTTGTAAAATACAGTACAAACGATGGTATAGACTTGAATAAATTTATAACTAAAATTGAGCCATATGATCAAAGCAATAATGCTGTGGAATTATCATCCAGGCTTCCATTTGGTCAACCAGAACCAAATCAATCGTATAATTCATCAACTCATCCATTATCGAAAAGCTTCCAGTCGACGCCATCTGCGCTTTATCCAACCAATTTTGATGTTACATCTCAGCATTCACCTGCACCAGCCCCTACATCTCCATTCTTTCACCAAGCCCAAAGTTACCCAACCAACAATACATTTAGAGTGCCACCACAAGCTGTCTTTCAGACATCTCAGGCTTTCTCTTCTCATTATTCTCCTCAAAATTTACCTTCCCAACGGTCAAATGGATCATCTCCATCCATACTTCATTCTACCCTACTCAATAAGCCCAGACATCAATCATTGGATCCATACAATCCAACATATCATCCACGTTTTTCCAAAGCTAATCAATTTTCATCCTCAAATCAATCCAATTATCATTTAGCGGCATTACAGCAGTTTCCACGCGTGCAATCATCATACAATTCAGATTCTGCAAACCAATTCTCATTTTATCCATATCCACCTTCACTTAACAGACCTCCCAAACATAATCCATCAGCTGCACGACAAAGATCGCCAATACAACAAAGATCTCCGTATCCTATTTTTAGTTCACCTCCATTAGCGGAAAATCAAAACGCAGCAAATTTACAACAAAATAATCCGCCATCTTTGCCTGTACTCAATCCGCCATCTTTAGCTGAATTTCAGTCCGCTCTTCAACCTTCTAAAGAATCTGAATCGCAGCTGAACTCAATAACAACAACACAGCCTGCCACACCCTTACCTAACCAATCGCCTTTAGTCGAATTTAGCCCTTCACCTCCAGATATTAAACCGGTTCTTCAGTCACCATCTCCTAAAAATAATTCGGCTTCACCTACAATTAATTTATCTCCAATTATTCTTCAACCACCTCCAGTGGAATCAGCTTCAACTGAACAGCCGCTCCCATTTCAGCAAGATTTGAGTCAACACGCTCAAACTCGACCACCTGTTCAGCTACCACAACATTCAAATAAACCATCTTCACTTGCATCGCTTTTACTTCAACCATCCTTGGATCATTTATCTTCAAATCAACCGTCAAGTAATCAAACTTCAATTTTTCCCTCTTCAAATCAACCAACTTCGCTTTTTCCATCTTCAAATCAGTCACCTTCGATGCATCTCCCTCAAGGGTCATCCATTCACCCCCTCCAACTCTCATCAATGCATCCAAATCGCAATACGTTTACTCCACCATCCCCATTTAATCGCCCTTCTAATTTTAATTCATCTTCGCCAATGCAATCAAATATTTCAAGATTCAACCATCCTAAATTCAGCTCACTACCTCCAACAAGATTTACACCCCCACCTTCCTCAAAATTCGATTCGACTCCACCTCTTCACCAATCGTCGTTCAATTTCCCTCCAGCGGCCCACCATAACCAACAATCCGAATTTAACTCAAACTCCTCCATGTACCCGCCGGCATTTTACCCGATTTCTTACAACAACACATCGGGACCGCGCCCCTCAATTTCATCTGGAGACTCGTCGCCAATGTTCCATTCCAACCTTTCATTTCACCCAAACTTTTCGAATCGTCCACACTTTTCTTCGATGCGCCCACCCATGTCATCAATTCGTCCACATTTATCATCAATACGCCCCCACTTATCGTCAATTCGTTCGTCTGTGCCATCTCCTCCTCCACAAAACTTACCAGCGCTCTTCTTCCCCCCTTCATCGACCGTTTCTTCGTTCCTTCAAGCCATGCGACCGCCACCCTCTCAAAATTCGTCATTTTTGCAGCAACATCCTTCCATGTACCGCTTACCTCAACCTGGACCAAACACGCAAATCCGTATATTTAATCCAAACTTTTCCTCCTTAAACATGAACGGAATGCAAGATCCGGGAAACCAACAAGCAAATTTTTCTCATCATCAAATGAGCAAACCTCCAGTTTTGTTGTGTCCAATTTGTGGAAGGAATTTTGTATCTAAAGAGCTTCTTGACCAACACATGACCATCCATACCTTTAAGTGCGACCCATGCAACTTCCTAACAACTTCCAACGAAAGTTACATTGAACATTTGTCGACCCACAAAAAATGTGATAATGCAGATGTAAGTAACGCCAAAGTACAAGAGCCTGTTGATCAGGTGTACAAATGCAATACTTGCAACTACAACACTCAGGATAAAGCTTCCTATGAAGAACACACCATTTCTCATAAATCTGAATATTTTTACAAGTGCCAATTGTGTACCTTCAAAACTATACACTCCTACAGTTTAAGGAGACACATGAAGGTGCACTCGACCGTTACAGATTCTATTTACAAATGTAACCAGTGCACTTTCGATTGCGATAAGGATAACCTGTTGAAGGATCACATGATTAAGTTCCATTCTGAGAAGGTTTCGAATGTTGAAAATACCGAAGAAGAACTCGTACAAGTGGAGCCCTACCAGGTTTCAATCGACGATATTCAGAATATTTTTCAAGACGACCACGAGTCTAATGATGAAGGTGAAAAGGAGGAACTCCTCATGGAGAACGAAAATGAAAATGAACTTATGGACGATTCCGACTCATACATGATAACTGCCGCGGATTTGGAGAAAATTTTGAAAGAAGAGCCGTCAGATGATCTCGAAAATGAGTCGGGGGATTCGAAAAATAAAAGTAGTGATTTCGAACAGAGCGGCGAGGACGGCGGAAGCGGCAGCGATAAAAGTGTGTTTAAGTGTTCGGTGTGCAATCAACCGTTTCAGTTTAAGTATCAGCTGAAGAAGCACATGATAATTCATTCGGTTACCAAGAAAATATTAGAATGTAAAATGTGCGAATATCGGACAACTACGAAAAGTCACCTACAAGTTCATATAGCCACTCATACAGGTGGAAAAATTTATAGGTGTGACCAGTGTAGTTATTGTACGGTATATTTTAGTAATCTAGAGAAGCACAACAGGGTGCATACAGGTGAGAAACCATATAAATGCGATTATTGTGATTATAGCGTAACAAAATTGTCACGACTGAAGAACCACTTAAACAATCACGCCAAACAAAAATTATATACATGTAAAGAATGTTTTTATGAAGCTGATAGCGAGGAAAATTTACTGAGCCACAAAGAAATACACTCCATGGGAAAACATTTTCTCGAAGATCCTTCAAAAAAAAAGTTCCGATTAGTCAATTTTTGA
- Protein Sequence
- MSQVCRTCLKIVENKSLVFNIEVKEPTHDIVHIKAKLEACVPEIVLNRVKDSVICNYCLCALNTAYDFKTKCLESEKKIYHFVKYSTNDGIDLNKFITKIEPYDQSNNAVELSSRLPFGQPEPNQSYNSSTHPLSKSFQSTPSALYPTNFDVTSQHSPAPAPTSPFFHQAQSYPTNNTFRVPPQAVFQTSQAFSSHYSPQNLPSQRSNGSSPSILHSTLLNKPRHQSLDPYNPTYHPRFSKANQFSSSNQSNYHLAALQQFPRVQSSYNSDSANQFSFYPYPPSLNRPPKHNPSAARQRSPIQQRSPYPIFSSPPLAENQNAANLQQNNPPSLPVLNPPSLAEFQSALQPSKESESQLNSITTTQPATPLPNQSPLVEFSPSPPDIKPVLQSPSPKNNSASPTINLSPIILQPPPVESASTEQPLPFQQDLSQHAQTRPPVQLPQHSNKPSSLASLLLQPSLDHLSSNQPSSNQTSIFPSSNQPTSLFPSSNQSPSMHLPQGSSIHPLQLSSMHPNRNTFTPPSPFNRPSNFNSSSPMQSNISRFNHPKFSSLPPTRFTPPPSSKFDSTPPLHQSSFNFPPAAHHNQQSEFNSNSSMYPPAFYPISYNNTSGPRPSISSGDSSPMFHSNLSFHPNFSNRPHFSSMRPPMSSIRPHLSSIRPHLSSIRSSVPSPPPQNLPALFFPPSSTVSSFLQAMRPPPSQNSSFLQQHPSMYRLPQPGPNTQIRIFNPNFSSLNMNGMQDPGNQQANFSHHQMSKPPVLLCPICGRNFVSKELLDQHMTIHTFKCDPCNFLTTSNESYIEHLSTHKKCDNADVSNAKVQEPVDQVYKCNTCNYNTQDKASYEEHTISHKSEYFYKCQLCTFKTIHSYSLRRHMKVHSTVTDSIYKCNQCTFDCDKDNLLKDHMIKFHSEKVSNVENTEEELVQVEPYQVSIDDIQNIFQDDHESNDEGEKEELLMENENENELMDDSDSYMITAADLEKILKEEPSDDLENESGDSKNKSSDFEQSGEDGGSGSDKSVFKCSVCNQPFQFKYQLKKHMIIHSVTKKILECKMCEYRTTTKSHLQVHIATHTGGKIYRCDQCSYCTVYFSNLEKHNRVHTGEKPYKCDYCDYSVTKLSRLKNHLNNHAKQKLYTCKECFYEADSEENLLSHKEIHSMGKHFLEDPSKKKFRLVNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273136;
- 90% Identity
- iTF_01294435;
- 80% Identity
- -