Basic Information

Insect: Rhagonycha fulva
Gene Symbol: RREB1
Assembly: GCA_905340355.1
Location: HG996555.1:99468169-99473765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.019 0.54 11.7 1.4 1 23 63 85 63 85 0.95

2 15 0.018 0.52 11.7 0.0 1 23 98 120 98 120 0.97

3 15 1.8e-05 0.00051 21.2 3.1 1 23 126 148 126 148 0.98

4 15 0.0086 0.25 12.7 2.0 2 23 251 273 251 273 0.90

5 15 1.4 39 5.8 0.7 1 19 323 341 323 342 0.89

6 15 0.44 13 7.4 0.3 1 23 474 496 474 496 0.97

7 15 0.015 0.43 12.0 0.7 1 23 505 527 505 527 0.96

8 15 0.017 0.49 11.8 3.7 1 23 533 556 533 556 0.97

9 15 0.0014 0.041 15.2 1.5 1 23 961 984 961 984 0.96

10 15 0.00023 0.0065 17.7 0.6 2 23 1210 1231 1209 1231 0.97

11 15 1.4 41 5.7 7.1 1 23 1237 1260 1237 1260 0.97

12 15 0.00081 0.023 16.0 1.0 1 23 1289 1313 1289 1313 0.97

13 15 0.85 24 6.5 2.5 1 23 1377 1400 1377 1400 0.95

14 15 0.067 1.9 9.9 0.4 3 23 1448 1468 1446 1468 0.93

15 15 0.053 1.5 10.2 7.8 1 23 1474 1496 1474 1496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.019	0.54	11.7	1.4	1	23	63	85	63	85	0.95
2	15	0.018	0.52	11.7	0.0	1	23	98	120	98	120	0.97
3	15	1.8e-05	0.00051	21.2	3.1	1	23	126	148	126	148	0.98
4	15	0.0086	0.25	12.7	2.0	2	23	251	273	251	273	0.90
5	15	1.4	39	5.8	0.7	1	19	323	341	323	342	0.89
6	15	0.44	13	7.4	0.3	1	23	474	496	474	496	0.97
7	15	0.015	0.43	12.0	0.7	1	23	505	527	505	527	0.96
8	15	0.017	0.49	11.8	3.7	1	23	533	556	533	556	0.97
9	15	0.0014	0.041	15.2	1.5	1	23	961	984	961	984	0.96
10	15	0.00023	0.0065	17.7	0.6	2	23	1210	1231	1209	1231	0.97
11	15	1.4	41	5.7	7.1	1	23	1237	1260	1237	1260	0.97
12	15	0.00081	0.023	16.0	1.0	1	23	1289	1313	1289	1313	0.97
13	15	0.85	24	6.5	2.5	1	23	1377	1400	1377	1400	0.95
14	15	0.067	1.9	9.9	0.4	3	23	1448	1468	1446	1468	0.93
15	15	0.053	1.5	10.2	7.8	1	23	1474	1496	1474	1496	0.98

Sequence Information

Coding Sequence: ATGGATGTATCTCCAAAGTCTACTTTAGCAACCAAAGATTTTAATGTGAACCAAAGCAACCAAAGTGATTCGGGTATTTTATCTGCTACCGGAACCTCCACATACATCGATATGGAAGTTAGCAGCAACCGTTCCGAAAACGAAGAAACCGATAATAGAAGCAGCTGTAGTTCTCCAGACCGCAAATTTTTATGTTCAATTTGCGAGACCATCCTAACGTCTCAACATGAATTCACTCTTCACATACGATCTCATAACAACGAATCCGAAGCGCAAGACAACGAAAAAGGTTTTGTCTGTCGCATTTGTTCCAAAATTTTAAGTTCAGCTGCAAGTCTGGACAGGCATGTGCTCATACACAGCGGAGAAAGACCTTTTCCATGCAAATATTGCGGTGACACGTTTACTACAAATGGAAACATGCACCGTCATATGCGTACTCATACAAATAAAACAAATTACGAATCAGACGGAAGTTCTGACAGTGGCGCAAGCTGCAGTTCTAAAACTGTGGAATACAATAATAACAAGGTGATACCAAAAATAGATATCAACACTGGTTGTGATATGACCAAAAAGCGAAATTGCACTACCATAGACGAAAACAAAAACAATAAAAGAATTAAATTACAAGAACCTTCGTACGAGTCTAGTCAAACTTATGCTTGTCCTGTATGCAGGCGGGATGATTTTACTTCCACCGATATTCTGGAAATACATTTGGAAGACAATCATCCAGATTTCTCTGCGAAATGTAACATTTGCAATAAAACTTTTAAAAATTTGAAAGTATTAAGAGAACACAAGTTTAATATTCATACCAAAAATGGAAGCAGCAAACACCAAAAAAATTCCGTCCTAGGATTTCAAGATTTAACCTTCGTTGATTTTTCGAGTCAAAAGTTCCCGTACATAGCAAAATACGAATGCGAAAAAAATTTACACAAACCTGCCAGTGCACCAAAATTCCAATGCAATAAGTGTTCCAGAGCATTCCCGTGTTCTATGTCCCTTGAAATTCACGTCCCCGATTGTACGGCAAGTTTGGATTTATCGATAAAAACAAAATTGCACTCAAGTGATGAAAGGGAATCCGAAAAAGATGTGTACCGAAACGACTTTTTTGCACGATTAGATCTTCAAAGTAAATTACAAAAATCTGAAGATGGAAGAGAGGAGCAAGTATTAAAATACAACACTAACATCTTACCTCCCTCCGATACCAAAGACTTAGCTGACATACAATCCATTATTTCCATCACCACAAATGGAAGTTTATTGCATCAACTTCAAACAAATCCGAACGACTTAAATTCGATTAAGCAAGAAAGTGAACTGGATACGTCTAGAAACGAAAATGACGAAGAATCGCAAGATATATTTGCAACCGAATTTCGTAAAATGAAAATACGTGGCGAATTTCCTTGTCGACTCTGTCGTTCAGTGTTTCCTAACTTGCGAGCTTTGAAAGGTCACAACAGATCTCATTTAAATGGAAACAATAATGGAATGTATCTCTGCAATATGTGTCCACACTCGTCGTTAGACAAAGCAGCTCTAATAAGACACATGAGAACGCACAACGGTGATCGTCCTTACGAGTGCTCACTCTGTAAGTACGCTTTCACAACAAAAGCAAACTGTGAAAGACACCTTAAGAATAGACATGCCAAAAACACAAGAGAAGAAGTGAAGAAAGCTATTATTTATCATCCTTCCGAAGATCCGAGTAATGAAGAAATAAGTAAAATGTTGTCCCACGAAGAAACAAATAAAGCACTCCTTCTCTCGAATACTCACAAAAGCGTCAACAAACCGACCGATAAAGTAAAAATTATGACACCAAATATTACAAATCTTTTAGTAACAAGTCCAACAAAGAATCCTACTTTATCCGAAAATATCAACAGTTTTAATATCGAAGCGAATATTTCTCGGTGCTATCCTGGAAACGAAATTCCTCATAAAGATAATCTGAATGTACCTCCTCAAATTGTGGCACCTTACTCACCACAGTTCAACTTTTACCCCAAACTTGAAAATACTTCAACGCCACAGAAAACTTTACCTAAAATTAACGTAAAAAATATAGAATCGCTGATAACTCCCGAACAAGAAGCAAATGAAAATTTAAATAATTCGGATTGTGAGTCGATGGAATGCGACGATCAACCAATGGATTTAGTTTTAGATTTAAGTAAGAAGAAATCGGAACCTATGATTGTTCCGCAAGAAATTCAAAAAGTGTCGCCGGTAATGGATCATCCTCAAGACTTATCAAAAAGAAGTACCGAAATTCCGATTCCAACACAAAACGAAATTTTAACTCAAAATCTTTTAAAATCTACAGCAAAATTGGATCAGGCTGCTTTGTATGCTTCCCAATTAGCGTTATACAGAAACACATTTCCTCCTTTGCATTCATTACACACCTGGCCTTTCTCACTGAATCCGTTATTATTTCAATCAATGTCATCGCCACTTTTAACTCAGGATCCCCAAGAAATCAAAGATCGATTGCAACGTTTACAACTATGCGGTGGAGGAATGATTATGGATAATTTTGCGGAACGATTTAAAAATTATCAGCATTCTATGAATAATGCAAATTTAAACGCATTCAATAATTATAAAGTAAATGAAGTTCAACAAGCTATGCACGAATCCAATTATTTACATAGAACAGCCAAACCCGACGATTGTACACCTCTATCCTTATCAGTTGATCAAAATCTGGGAGAAAACATGACCTCAATGCATAGTCCTGGACATATACCAAAGGCAGAATCTATTACAGCTTCCAGCTCGGTAAAAATGATTATTAAAAATGGCGTTTTGATGCCCAAACAAAAACAAAGGCGATATAGAACCGAAAGGCCATTTTCGTGCGAATATTGCTCTGCCAAATTTACACTTCGTTCCAACATGGAGCGCCATATCAAACAGCAGCATCCTCAATTTTGGCAACAACGACATAAAGCAAGCATGGGAGCTGGTAGAAAACCTCAATCAATCACTTCAAATCAAAAACAAAATTTTTGTAATATAAACATTCCTAATTATGACACACCGAGAAAACAAGTATATGACGAACCAAAAGATAATCAAATAAGTGACAAAATCAAGTATGCAATCCTTGCCCAACAGTTGAAAGATTCGCATGATTATAAAACAACCAGCAAAGGTGATATTAAAATCAAAGAAGAGGACGAAGAGGTACCACTAATAATTGATGAACCTAACGAAAATGCTAACAAAATTGACGAGGGTGTCGATCGAAGAATAAACGACCACTTTTCTGATAAAAGTAAGCAATACGCTGAAATGCACGCCTCAAACACTCTTAATTTCAATACCATAAAAAATGAAGAAACTCAAGATTTAGTTCCAGTTGCTCGATTATTAGACAACGCATCACAACAACCTTTTAAGAAATACTTTCACAGAGAAACGGATGGCCGTGAAGGTGGTGTTAGTGAAGAAGACGAAGAAGGTTTAGTTGCAAGTGGTAGTACAAGCGAAGAAAATAATTCCGGAACGGATGAAAATAGATCCGAATCGGAAAATGTTGTTTTACCCACACCTGTGAAGAAAAAGTCGGCATATTCTTTGGCTCCAAATCGTGTTACTTGTCCTTACTGTAAACGTAAATTTCCTTGGTCGTCATCATTGCGAAGACACATATTAACCCATACTGGACAAAAGCCATACAAGTGTAGTCATTGTTCGTTGCTATTCACAACCAAATCTAATTGTGATCGTCATCTTCTTCGAAAACATGGAAATGCGGCTAGCGTGATTAACACCAACGATCATTCCGCAGGTTCAACAAATTTCATGATGCGAAATGTTCCCGATCGACCCTACAAGTGTCCTACTTGTCCGAGTAGTACATTTGCAACAAATTCAAATTTAAGAAAACACATTAGTACAAAACATTCGTTACAAGGTGCTCCAAGTGATGATGCACAAGTTTCTCCTGGATACGAAGCCGGAAGTTCCGAAGACGAAAAAGTGTCCCTAGGTGAACGAAAAAGTGAGTGGGATAAGCAATTACCTAACAACAAAGCACTTCCATATTCTAACTCCGATCCTCAGAATATACACTTGCAAAATTCCGATTTACCGTTTAAATGTCATCTATGCGATAATTCATTCGGAGAACGACACGATGCTCTGGATCACATCAAAGAAAAACACAATTCCGAATACGAATTGTTATTGTCTAAAAATGCATTGGACGTAAACGCCACGACGCCCGACGAAAATCCTCACCACGAAGAAAATGAAGAAAGCGAAGTTCGGGGAAAATTTCCGGATTATGCAAACAGAAAAGTGATTTGTGCATTTTGCATGCGCCGATTTTGGTCTGCGGAAGATTTGAGAAGACACATGAGGACACATACTGGAGAGAGGCCATTCAGTTGTGACGTATGCCATCGTCGTTTCACCTTAAAACATAGCATGCTGCGACACCGAAAGAAGCACAGCTTGCAGTCAGAAAATGATCAAATCAATAGTGACGAAGATAATAACTGTGTAAATTTAAGTTCATCATATAAAACAAATAATAACAATATGGAAAGGAAGTCGTCCGAAAAAACGGACGAATCTGACGGTACCGAAAGTGACTTAATCAGCAACTTGTTGGGAATTCGCGATCGTTCGATCATAGAACAAGTTTTAACTTCTTCTGCCGATGATGCAGCCAAATTATTAGGTGTTAAAAGTGGAGAATCGGAATAA
Protein Sequence: MDVSPKSTLATKDFNVNQSNQSDSGILSATGTSTYIDMEVSSNRSENEETDNRSSCSSPDRKFLCSICETILTSQHEFTLHIRSHNNESEAQDNEKGFVCRICSKILSSAASLDRHVLIHSGERPFPCKYCGDTFTTNGNMHRHMRTHTNKTNYESDGSSDSGASCSSKTVEYNNNKVIPKIDINTGCDMTKKRNCTTIDENKNNKRIKLQEPSYESSQTYACPVCRRDDFTSTDILEIHLEDNHPDFSAKCNICNKTFKNLKVLREHKFNIHTKNGSSKHQKNSVLGFQDLTFVDFSSQKFPYIAKYECEKNLHKPASAPKFQCNKCSRAFPCSMSLEIHVPDCTASLDLSIKTKLHSSDERESEKDVYRNDFFARLDLQSKLQKSEDGREEQVLKYNTNILPPSDTKDLADIQSIISITTNGSLLHQLQTNPNDLNSIKQESELDTSRNENDEESQDIFATEFRKMKIRGEFPCRLCRSVFPNLRALKGHNRSHLNGNNNGMYLCNMCPHSSLDKAALIRHMRTHNGDRPYECSLCKYAFTTKANCERHLKNRHAKNTREEVKKAIIYHPSEDPSNEEISKMLSHEETNKALLLSNTHKSVNKPTDKVKIMTPNITNLLVTSPTKNPTLSENINSFNIEANISRCYPGNEIPHKDNLNVPPQIVAPYSPQFNFYPKLENTSTPQKTLPKINVKNIESLITPEQEANENLNNSDCESMECDDQPMDLVLDLSKKKSEPMIVPQEIQKVSPVMDHPQDLSKRSTEIPIPTQNEILTQNLLKSTAKLDQAALYASQLALYRNTFPPLHSLHTWPFSLNPLLFQSMSSPLLTQDPQEIKDRLQRLQLCGGGMIMDNFAERFKNYQHSMNNANLNAFNNYKVNEVQQAMHESNYLHRTAKPDDCTPLSLSVDQNLGENMTSMHSPGHIPKAESITASSSVKMIIKNGVLMPKQKQRRYRTERPFSCEYCSAKFTLRSNMERHIKQQHPQFWQQRHKASMGAGRKPQSITSNQKQNFCNINIPNYDTPRKQVYDEPKDNQISDKIKYAILAQQLKDSHDYKTTSKGDIKIKEEDEEVPLIIDEPNENANKIDEGVDRRINDHFSDKSKQYAEMHASNTLNFNTIKNEETQDLVPVARLLDNASQQPFKKYFHRETDGREGGVSEEDEEGLVASGSTSEENNSGTDENRSESENVVLPTPVKKKSAYSLAPNRVTCPYCKRKFPWSSSLRRHILTHTGQKPYKCSHCSLLFTTKSNCDRHLLRKHGNAASVINTNDHSAGSTNFMMRNVPDRPYKCPTCPSSTFATNSNLRKHISTKHSLQGAPSDDAQVSPGYEAGSSEDEKVSLGERKSEWDKQLPNNKALPYSNSDPQNIHLQNSDLPFKCHLCDNSFGERHDALDHIKEKHNSEYELLLSKNALDVNATTPDENPHHEENEESEVRGKFPDYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCHRRFTLKHSMLRHRKKHSLQSENDQINSDEDNNCVNLSSSYKTNNNNMERKSSEKTDESDGTESDLISNLLGIRDRSIIEQVLTSSADDAAKLLGVKSGESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271811;
90% Identity: iTF_00273069;
80% Identity: -