Rful005743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:23353667-23355292[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00068 0.02 16.2 3.1 1 23 81 103 81 103 0.99
2 16 0.00011 0.0031 18.7 2.7 1 23 109 131 109 131 0.98
3 16 0.00017 0.005 18.1 2.4 1 23 137 159 137 159 0.98
4 16 0.0063 0.18 13.1 1.7 1 23 165 187 165 187 0.98
5 16 0.00017 0.0048 18.1 2.9 1 23 193 215 193 215 0.99
6 16 0.0013 0.039 15.3 2.1 1 23 221 243 221 243 0.98
7 16 0.00016 0.0046 18.2 2.1 1 23 249 271 249 271 0.98
8 16 2e-05 0.00058 21.0 0.6 1 23 277 299 277 299 0.99
9 16 0.00035 0.01 17.1 2.5 1 23 305 327 305 327 0.99
10 16 0.0003 0.0086 17.3 1.6 1 23 333 355 333 355 0.99
11 16 0.00021 0.006 17.8 2.7 1 23 361 383 361 383 0.99
12 16 0.0004 0.012 16.9 1.9 1 23 389 411 389 411 0.99
13 16 9.1e-06 0.00026 22.1 3.9 1 23 418 440 418 440 0.98
14 16 0.00057 0.016 16.4 1.5 1 23 446 468 446 468 0.98
15 16 6.8e-05 0.002 19.3 2.1 1 23 474 496 474 496 0.99
16 16 0.0056 0.16 13.3 2.6 1 23 502 525 502 525 0.98

Sequence Information

Coding Sequence
ATGTGGTGTGGCGGGCGATATATGGAACGCTTAGTAATGGTAGCTTTGTTACAGGGTACTCGATGGGATCCAAATAACCATGCTCAAATTAAATCAGAAGAAATAGAATTGAAGTTGGAAGATTTGCACCATCATTCCATTAACATACAAGAAGACACTTCAGTTCAAAGTCGCAAAACAAAAGCAAGTCCTGTACCGCTCATGCGTGAAATTTCTAACTGTAACTCTAGTAAGAAATCCTTCAAGTGCGTAATTTGTGATTTCAAATCTGCACATAAGAGTAGTTTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGGAAGTTTAAAACGTCATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGAAAATTTAAAACTACATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGCCTTCCAATGCGCCCGAAAGGGAAGTTTAAAACTACATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGATTTCAAATCTGCACATAAGAGTAGTTTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCTAAAGGGAAGTTTAAAACGTCATTTAACAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGGAAATTTAAAACTACATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCAAATACGCGCGAAAGGGAGATTTAAAACTTCATATAACAACTCATACAGGCGAGAAAGCCTATCAGTGTAAAATTTGTGACTTCAAATGCGCGCGAAAGGGAGGTTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCCTATCAGTGTGAAATTTGTGACTTCAAATGCGCGCGAAAGGGAGGTTTAAAACTTCATTTAACCACTCATACAGGCGAGAAAGCGTTTCAGTGTAAAATTTGTGACTTTAAATGCGCGCAAAAGGGAGGTTTAAAACTTCATTTAAAAACTCATACAGGCGAGAAAGCCTATCAGTGTGAAATTTGTGCCTTCCAATGCGCGCAAAAGGGAAATTTAAAAAGTCATTTAAAAACTCATAATATAGGCGAGAAAGCGTTTCAGTGTAAAATTTGTAACTACAGATTTGCACAAAAGGGACATTTAAAAAGTCACTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCAAATGCGCGCAAAAGGGAGGTTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGGAAGTTTAAAAGTACATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATCTACATATAAGAAAAGATTACAACTACATTTGAGGAGCAGACATTCTATATGTAGTATGTCCATAAGTTTAAATGATAAGTTATTAAAAACGTAA
Protein Sequence
MWCGGRYMERLVMVALLQGTRWDPNNHAQIKSEEIELKLEDLHHHSINIQEDTSVQSRKTKASPVPLMREISNCNSSKKSFKCVICDFKSAHKSSLKLHLKTHTGEKAFQCEICDFQCARKGSLKRHLTTHTGEKAFQCEICDFQCARKENLKLHLTTHTGEKAFQCEICAFQCARKGSLKLHLTTHTGEKAFQCEICDFKSAHKSSLKLHLKTHTGEKAFQCEICDFQCALKGSLKRHLTTHTGEKAFQCEICDFQCARKGNLKLHLTTHTGEKAFQCEICDFKYARKGDLKLHITTHTGEKAYQCKICDFKCARKGGLKLHLTTHTGEKAYQCEICDFKCARKGGLKLHLTTHTGEKAFQCKICDFKCAQKGGLKLHLKTHTGEKAYQCEICAFQCAQKGNLKSHLKTHNIGEKAFQCKICNYRFAQKGHLKSHLTTHTGEKAFQCEICDFKCAQKGGLKLHLTTHTGEKAFQCEICDFQCARKGSLKVHLKTHTGEKAFQCEICDFKSTYKKRLQLHLRSRHSICSMSISLNDKLLKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01292041;
90% Identity
-
80% Identity
-