Rful004416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:23304201-23306051[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00079 0.023 16.0 3.1 1 23 81 103 81 103 0.99
2 19 0.00012 0.0036 18.5 2.7 1 23 109 131 109 131 0.98
3 19 0.0002 0.0057 17.9 1.5 1 23 137 159 137 159 0.99
4 19 0.00066 0.019 16.2 2.4 1 23 165 187 165 187 0.99
5 19 0.00071 0.02 16.1 1.8 1 23 193 215 193 215 0.99
6 19 0.00059 0.017 16.4 2.9 1 23 221 243 221 243 0.99
7 19 0.00028 0.0082 17.4 1.8 1 23 249 271 249 271 0.98
8 19 0.0031 0.088 14.1 2.4 1 23 277 299 277 299 0.98
9 19 0.00071 0.02 16.1 1.8 1 23 305 327 305 327 0.99
10 19 9e-05 0.0026 19.0 1.7 1 23 333 355 333 355 0.98
11 19 0.00066 0.019 16.2 2.4 1 23 361 383 361 383 0.99
12 19 0.00045 0.013 16.7 2.5 1 23 389 411 389 411 0.99
13 19 3.1e-05 0.00089 20.4 3.2 1 23 417 439 417 439 0.99
14 19 0.00028 0.0082 17.4 1.8 1 23 445 467 445 467 0.98
15 19 0.00059 0.017 16.4 2.9 1 23 473 495 473 495 0.99
16 19 0.00028 0.0082 17.4 1.8 1 23 501 523 501 523 0.98
17 19 0.0031 0.088 14.1 2.4 1 23 529 551 529 551 0.98
18 19 1.4e-05 0.0004 21.5 3.1 1 23 557 579 557 579 0.99
19 19 0.0014 0.039 15.2 1.5 1 23 585 608 585 608 0.98

Sequence Information

Coding Sequence
ATGTGGTGTGGCGGGCGATATATGGAACGCTTAGTAATGGTAGCTTTGTTACAGGGTACTCGATGGGATCCAAATAACCATGCTCAAATTAAATCAGAAGAAATAGAATTGAAGTTGGAAGATTTGCACCATCATTCCATTAACATACAAGAAGACACTTCAGTTCAAAGTCGCAAAACAAAAGCAAGTCCTGTACCGCTCATGCGTGAAATTTCTAACTGTAACTCTGGTAAGAAATCCTTCAAGTGCGTAATTTGTGATTTCAAATCTGCACATAAGAGTAGTTTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGGAAGTTTAAAACGTCATTTAACAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAAGGAAGTTTAAAACTTCATTTAATAACTCATACAGGCGAGATAGCGTTTCAGTGTGAAATTTGTGCCTTCCAATGCGCGCAAAAGGGAAGTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAGGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGAGAGGTTTAAAACTTCATTTAATAACTCATACAGGCGAGAAACCGTTTCAGTGTGAAATTTGTGCGTTCCAATGCGCCCGAAAGGAAAGTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGGGAGATTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGCCTTCCAATGCGCCCGAAAGGTAAGTTTAAAACGTCATTTAACAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCCCAAAAGAGAGGTTTAAAACTTCATTTAATAACTCATACAGGCGAGAAACCGTTTCAGTGTGAAATTTGTGGCTTTAAATGCGCGCGAAAGGGAGATTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGCCTTCCAATGCGCGCAAAAGGGAAGTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGAGAAGTTTAAAACTTCATTTAATAACTCATACAGGCGAGAAACCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGGGAAGTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGGGAGATTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGCGTTCCAATGCGCCCGAAAGGAAAGTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATGCGCGCAAAAGGGAGATTTAAAACTTCATTTAACAACTCATACAGGCGAGAAAGCCTTTCAGTGTGAAATTTGTGCCTTCCAATGCGCCCGAAAGGTAAGTTTAAAACGTCATTTAACAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTCCAATGCGCCCGAAAGGGAAATTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAGTGTGAAATTTGTGACTTTAAATCTGCATATAAGACAAGTTTAAAACTACATTTGAGGAGCAGACATTCTATATGCAGTATGTCCATTTTCTGA
Protein Sequence
MWCGGRYMERLVMVALLQGTRWDPNNHAQIKSEEIELKLEDLHHHSINIQEDTSVQSRKTKASPVPLMREISNCNSGKKSFKCVICDFKSAHKSSLKLHLKTHTGEKAFQCEICDFQCARKGSLKRHLTTHTGEKAFQCEICDFKCAQKGSLKLHLITHTGEIAFQCEICAFQCAQKGSLKRHLKTHTGEKAFQCEICDFKCAQKRGLKLHLITHTGEKPFQCEICAFQCARKESLKRHLKTHTGEKAFQCEICDFKCAQKGDLKLHLTTHTGEKAFQCEICAFQCARKVSLKRHLTTHTGEKAFQCEICDFKCAQKRGLKLHLITHTGEKPFQCEICGFKCARKGDLKLHLTTHTGEKAFQCEICAFQCAQKGSLKRHLKTHTGEKAFQCEICDFKCAQKRSLKLHLITHTGEKPFQCEICDFKCAQKGSLKRHLKTHTGEKAFQCEICDFKCAQKGDLKLHLTTHTGEKAFQCEICAFQCARKESLKRHLKTHTGEKAFQCEICDFKCAQKGDLKLHLTTHTGEKAFQCEICAFQCARKVSLKRHLTTHTGEKAFQCEICDFQCARKGNLKRHLKTHTGEKAFQCEICDFKSAYKTSLKLHLRSRHSICSMSIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01292076;
90% Identity
-
80% Identity
-