Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996556.1:228845-234056[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.6e-05 0.0013 19.9 0.4 1 23 142 164 142 164 0.98

2 16 0.041 1.2 10.6 1.3 1 23 170 193 170 193 0.97

3 16 0.09 2.6 9.5 1.2 1 23 204 227 204 227 0.92

4 16 0.0011 0.031 15.6 0.1 2 23 247 268 246 268 0.96

5 16 0.59 17 6.9 7.1 1 23 274 296 274 296 0.82

6 16 0.00043 0.012 16.8 0.5 3 23 306 326 304 326 0.97

7 16 8.1e-06 0.00023 22.2 5.0 1 23 332 354 332 354 0.98

8 16 0.00096 0.028 15.7 2.3 1 23 360 382 360 382 0.98

9 16 1.5e-06 4.5e-05 24.5 0.2 1 23 388 410 388 410 0.98

10 16 0.00053 0.015 16.5 2.3 1 23 416 438 416 438 0.98

11 16 9.4e-07 2.7e-05 25.2 1.9 3 23 446 466 444 466 0.96

12 16 2.3e-06 6.6e-05 24.0 0.1 2 23 472 493 471 493 0.97

13 16 7.6e-05 0.0022 19.2 3.1 1 23 499 521 499 521 0.98

14 16 0.0008 0.023 16.0 0.4 1 23 527 549 527 549 0.97

15 16 2.2e-07 6.4e-06 27.2 0.9 1 23 555 577 555 577 0.99

16 16 0.0072 0.21 13.0 0.2 1 19 583 601 583 604 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.6e-05	0.0013	19.9	0.4	1	23	142	164	142	164	0.98
2	16	0.041	1.2	10.6	1.3	1	23	170	193	170	193	0.97
3	16	0.09	2.6	9.5	1.2	1	23	204	227	204	227	0.92
4	16	0.0011	0.031	15.6	0.1	2	23	247	268	246	268	0.96
5	16	0.59	17	6.9	7.1	1	23	274	296	274	296	0.82
6	16	0.00043	0.012	16.8	0.5	3	23	306	326	304	326	0.97
7	16	8.1e-06	0.00023	22.2	5.0	1	23	332	354	332	354	0.98
8	16	0.00096	0.028	15.7	2.3	1	23	360	382	360	382	0.98
9	16	1.5e-06	4.5e-05	24.5	0.2	1	23	388	410	388	410	0.98
10	16	0.00053	0.015	16.5	2.3	1	23	416	438	416	438	0.98
11	16	9.4e-07	2.7e-05	25.2	1.9	3	23	446	466	444	466	0.96
12	16	2.3e-06	6.6e-05	24.0	0.1	2	23	472	493	471	493	0.97
13	16	7.6e-05	0.0022	19.2	3.1	1	23	499	521	499	521	0.98
14	16	0.0008	0.023	16.0	0.4	1	23	527	549	527	549	0.97
15	16	2.2e-07	6.4e-06	27.2	0.9	1	23	555	577	555	577	0.99
16	16	0.0072	0.21	13.0	0.2	1	19	583	601	583	604	0.94

Sequence Information

Coding Sequence: ATGAATAATTCGGATATTTATGCTACAAATAATATTAATCTCAGTAAATTGTGCCGTGTTTGCATGATCGTTTTAGAAAACGATTATGTTTCCTTATTTGAAACAATTCCAACCGATTCTACTTTGTTGTCCACAAAAATGATGTCGTTTACTTGTTTACAGGTAAAATTTGAAGACGATTTGCCCAACGTCGTGTGCCTTACGTGTTCAAATAGAATCGAAAGTGCTTATTTATTAAAGTTGCAATGTTGTGAATCCGATTCTGCATTGCGTCGATATTTAAACTTGGAATTTCAATCTGAAAATCGTAATTCTGATCAAATTAAGAATGCAGTTCCGTCGGTTAATCTAAGCCACGGTTTGCTGTCAGAATTAAAAAATGAGGGTTCGCAAAATTTTACAGATGTAAATAAAAGTAAAACTTTTGAATGTGACGAATGTAAACTTGTGTTTGATAAACAAAGGCAACTGCGAATACATATTCGTGGCCACAAGAAAAAGAAAAGATATGTCTGCAAATTCTGTAACAAGAATTTTCTAGAAACTCTTCAACTAAATCAACACATGAAAGTGATGCACAATGGAGAAGAATATGAAAATAACACGATACATATTTGTACGGTGTGTGATGATAAGTTTGGTAATAATGAGAGTTTAATTGAACACATGGTACACAAGCATACGCAGAAGGAAATTAAAGAATTAAACGAAGGAAACGCCATGCACGACGAAAGATTAATGTGTAATGTTTGTAACAAGACATATTTAAAGGCCAGTAATTTAGCCGCCCATATGGGAACTCACACGGGCGAAAAACCTTTTGAATGTCATATTTGCGGTAAGAGGTTTACTCAAGGACGTGCTCATGCTTGCCACATGCGAACACATTCTAAGGAAATCGAGAAACCTTACGGTTGCAAATTGTGCAACAAAGAATTTGCACGAGAAAGTCAATTAGCTGTTCATTCAAAAAAGCATTTAGCTACAAAATCATTTGTTTGTAGCATCTGTAACAAGAGTTGCTGTAATTCGGGTAACCTCAAGTCTCACATGCGTTTGCACACCGGAGATAAACCATATTCCTGTAACATTTGTGGTCGAACCTTTGCTCAAAGTAACGCACATTCGTATCATATGAAAACACATTCAGGTGAGAGACCTTTCGAATGCGATGTATGCCCGAAGGCGTTTACCACAAATGGCCAATTAATAAATCATCGTCGCTTACACACAGGTGAAAAACCATTTGTTTGTACAGTTTGCAACAAACGATTTACGCAAAAGGTGGCGCATACAATACACATGATGACACACACTGGCAATAAACCACACTTGTGTAGTATATGTGGAAAAAAGTATTCACAAAACAGTCAGTTGGTCGAACATATGCGCACTCATACGGGCGAAACTTTACAATGTAATGTGTGTGGAAAAGGTTACTCTACCGCTGGAAATTTAGGTGCCCATATGAAGACCCACACGGGTATAAAAACGCATGTATGTCAAATTTGTCATAAGGGTTTTTATGTTGCCAACAAATTAGCGAAACATATGAGAACTCACACCGGAGAAAGGCCTTATGCTTGTACAATGTGTCCCAAACGTTTCACCAGTTCCGAAGTAATGAAAGTTCACAACAGAATTCACACGGGTGAAAGGCCGTATCGTTGCAGTATTTGTGAGAAAGGTTTCACAAATAATTCTCAGCTCACCGTTCATCTGCGTTCCCACACCGGACAGAGACCTTACGTATGCACGGTTTGTTTACAAAGTTTTGCCACTTCTACAAGTTTAAACTCTCACTCGGATACTTGTACTAGAATGATCGAGACCACCATATATTCTAATTTTACCTCAAATTAG
Protein Sequence: MNNSDIYATNNINLSKLCRVCMIVLENDYVSLFETIPTDSTLLSTKMMSFTCLQVKFEDDLPNVVCLTCSNRIESAYLLKLQCCESDSALRRYLNLEFQSENRNSDQIKNAVPSVNLSHGLLSELKNEGSQNFTDVNKSKTFECDECKLVFDKQRQLRIHIRGHKKKKRYVCKFCNKNFLETLQLNQHMKVMHNGEEYENNTIHICTVCDDKFGNNESLIEHMVHKHTQKEIKELNEGNAMHDERLMCNVCNKTYLKASNLAAHMGTHTGEKPFECHICGKRFTQGRAHACHMRTHSKEIEKPYGCKLCNKEFARESQLAVHSKKHLATKSFVCSICNKSCCNSGNLKSHMRLHTGDKPYSCNICGRTFAQSNAHSYHMKTHSGERPFECDVCPKAFTTNGQLINHRRLHTGEKPFVCTVCNKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLVEHMRTHTGETLQCNVCGKGYSTAGNLGAHMKTHTGIKTHVCQICHKGFYVANKLAKHMRTHTGERPYACTMCPKRFTSSEVMKVHNRIHTGERPYRCSICEKGFTNNSQLTVHLRSHTGQRPYVCTVCLQSFATSTSLNSHSDTCTRMIETTIYSNFTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268793;
90% Identity: iTF_00268793;
80% Identity: -