Rful007789.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14932366-14934162[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.9e-05 0.0023 19.1 3.4 1 23 62 84 62 84 0.98 2 19 0.00017 0.0049 18.1 1.6 1 23 90 112 90 112 0.97 3 19 0.0011 0.032 15.5 5.3 1 23 118 140 118 140 0.98 4 19 1.5e-05 0.00043 21.4 1.4 1 23 146 168 146 168 0.98 5 19 9.9e-05 0.0029 18.8 0.8 1 23 174 196 174 196 0.98 6 19 2.9e-05 0.00084 20.5 1.3 1 23 202 224 202 224 0.98 7 19 0.00023 0.0066 17.7 3.3 1 23 230 252 230 252 0.97 8 19 6.7e-05 0.0019 19.4 2.9 1 23 258 280 258 280 0.98 9 19 0.02 0.57 11.6 1.9 1 23 286 308 286 308 0.97 10 19 0.13 3.6 9.1 0.4 1 17 314 330 314 331 0.93 11 19 0.00033 0.0095 17.2 2.2 1 23 342 364 342 364 0.97 12 19 0.00037 0.011 17.0 1.6 1 23 370 392 370 392 0.97 13 19 3.8e-05 0.0011 20.1 1.9 1 23 398 420 398 420 0.98 14 19 2.9e-05 0.00083 20.5 1.6 1 23 426 448 426 448 0.97 15 19 7.9e-05 0.0023 19.1 3.0 1 23 458 480 458 480 0.98 16 19 1.5e-05 0.00044 21.4 1.1 1 23 486 508 486 508 0.97 17 19 3.3e-05 0.00094 20.3 2.6 1 23 514 536 514 536 0.98 18 19 0.00018 0.0052 18.0 1.0 1 23 542 564 542 564 0.98 19 19 0.17 4.8 8.7 2.9 3 21 571 589 569 591 0.93
Sequence Information
- Coding Sequence
- ATGGAACGGATCGACCAAGTATCGCAACCTCTCGATAATTCTAGTAGCCATGAAATTAAAGTAGAAGATGTGAAGTTTAATTTAGAAGATTTACATCACTCAATAGACATCAAAGACGAGACCGAGAGCGATGCTGAACAACTTCCACTGGAGAAACCCGTAAGAAAAACTAAAAAATCAAATTTTATTTGTCAGTTTTGTGGTTATAAATGTGCACAGAAATCAAAGTTAATAAGACATATAAAAACTCACACAGGCGAGAAACCTTTCGCTTGTGAGATTTGTAACTATAAATGTGCAGAAAGATCATTATTAAAAAGACATTTAAGAATTCACACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTAACCATAAATGTACACAAAGAGCATCTTTAAAAGACCATTTAAAAACCCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACGCAGAGCAAATTTAAAGGAACATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAGAGAGCATCTTTAAAAGGACATATAAGAACGCATACAGGCGAGAAACCTTTTGTTTGTGAGATTTGCGACTATAAATGTGCACAAAGAGCATCTTTAAAAGACCATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGTACAAAGGGGACATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCACGCAGACCAAACTTAAAGAAACATTTAAAAAGTCACACAATCGAGAAACTTTTTGCTTGTGAGATTTGTGACTGTAAATGTGCACAAGGAGCATCTTTAAAAGACCATTTAAAAAGTCATACAGGCGAGAAACCTTTTGCTTGCGAGATTTGTGACTACAAATGTGCACGCAGAGCAAATTTAAAAGAATATTTAAAAATGCACACAGGCGATAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGCATCTTTAAAAAGACATTCAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCACAAAAAGCATCTTTAAAAGACCATTTAAAAAGTCATACAGGTGAGAAACCTTTTGCTTGCGAGATTTGTGAATATAAATGTTCACAAAGAGGAAATTTAAAAGAACATTTAAGAACGCACACCGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGTGCATCTTTAAAAAGACATTTAAAAACTCACACAGGCGATAAACCTTTTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGGACATTTAAAAGAACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGATATTTGTGACTATAGATTTACACAAATAAAAAGTTTAAAAAGACATTTAAGTACGCACACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCACGCAGAGAAAATTTAAAAGAACATTTAAAAACTCACACTGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGCATCTTTAAAAGGCCATTTAAGAACGCACACAGGCGAGAAACTTGCTTGTGGGATTTGTGATTATAAATGTGCTGAAAGAGGATCTTTAAAACGTCATTTAAAATGTCACACTGCACAAACAAGAATCATTTAG
- Protein Sequence
- MERIDQVSQPLDNSSSHEIKVEDVKFNLEDLHHSIDIKDETESDAEQLPLEKPVRKTKKSNFICQFCGYKCAQKSKLIRHIKTHTGEKPFACEICNYKCAERSLLKRHLRIHTGEKPFSCEICNHKCTQRASLKDHLKTHTGEKPFACEICDYKCARRANLKEHLRTHTGEKPFACEICDYKCAQRASLKGHIRTHTGEKPFVCEICDYKCAQRASLKDHLRTHTGEKPFACEICDYKCVQRGHLKEHLKTHTGEKPFSCEICDYKCARRPNLKKHLKSHTIEKLFACEICDCKCAQGASLKDHLKSHTGEKPFACEICDYKCARRANLKEYLKMHTGDKPFACEICDYKCAQRASLKRHSKTHTGEKPFACEICNYKCAQKASLKDHLKSHTGEKPFACEICEYKCSQRGNLKEHLRTHTGEKPFACEICDYKCAQSASLKRHLKTHTGDKPFEKPFACEICDYKCAQRGHLKEHLRTHTGEKPFACDICDYRFTQIKSLKRHLSTHTGEKPFSCEICDYKCARRENLKEHLKTHTGEKPFACEICDYKCAQRASLKGHLRTHTGEKLACGICDYKCAERGSLKRHLKCHTAQTRII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292026;
- 90% Identity
- -
- 80% Identity
- -