Rful010658.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:14947820-14949700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.4e-05 0.0024 19.1 3.4 1 23 62 84 62 84 0.98 2 20 0.00035 0.01 17.1 2.2 1 23 90 112 90 112 0.97 3 20 0.00035 0.01 17.1 2.2 1 23 118 140 118 140 0.97 4 20 4.2e-05 0.0012 20.0 1.9 1 23 146 168 146 168 0.98 5 20 0.0012 0.035 15.4 0.6 1 23 174 196 174 196 0.98 6 20 0.00011 0.0033 18.6 1.9 1 23 202 224 202 224 0.98 7 20 0.00024 0.007 17.6 3.3 1 23 230 252 230 252 0.97 8 20 7.1e-05 0.002 19.3 2.9 1 23 258 280 258 280 0.98 9 20 0.0028 0.082 14.2 3.0 1 23 286 308 286 308 0.97 10 20 6.2e-05 0.0018 19.5 1.3 1 23 314 336 314 336 0.97 11 20 3.8e-05 0.0011 20.1 1.5 1 23 342 364 342 364 0.97 12 20 0.00032 0.0093 17.2 4.7 1 23 370 392 370 392 0.97 13 20 0.00042 0.012 16.9 3.5 1 23 398 420 398 420 0.98 14 20 5.8e-05 0.0017 19.5 1.7 1 23 426 448 426 448 0.98 15 20 7.1e-06 0.0002 22.4 0.6 1 23 454 476 454 476 0.97 16 20 0.00014 0.0039 18.4 2.7 1 23 486 508 486 508 0.97 17 20 0.0024 0.069 14.5 4.4 1 23 514 536 514 536 0.97 18 20 0.00061 0.018 16.3 0.7 1 23 542 564 542 564 0.98 19 20 0.00028 0.0081 17.4 1.1 1 23 570 592 570 592 0.97 20 20 0.17 5 8.6 2.9 3 21 599 617 597 619 0.93
Sequence Information
- Coding Sequence
- ATGGAACGGATCGACCAAGTATCGCAACCTCTCGATAATTCTAGTAGCCATGAAATTAAAGTAGAAGATGTGAAGTTTAATCTAGAAGATTTACATCACTCGATAGACATCAAAGACGAGACCGAGAGCGATGCTGAACAACTTCCACTGGAGAAACCCGTAAGAAAAACTAAAAAATCAAATTTTATTTGTCAGTTTTGTGGTTATAAATGTGCACAGAAATCAAAGTTAATAAGACATATAAAAACTCACACAGGCGAGAAACCTTTCGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGCGTCTTTAAAAAGACATTCAAAAACTCACACAGGCGAGAAACCTTTCGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGCGTCTTTAAAAAGACATTCAAAAACTCACACAGGCGAGAAACCTTTTGCTTGCGAGATTTGTGAATATAAATGTTCACAAAGAGGAAATTTAAAAGATCATTTAAGAACGCACACCGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACTGAGAGCATCTTTAAAAGGACATATAAGAACGCATACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGACTATAAATGTGCACAAAGAACATCTTTAAGAGACCATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGTACAAAGGGGACATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCACGCAGACCAAACTTAAAAAAACATTTAAAAAGTCACACATTCGAGAAACTTTTTGCTTGTGAGATTTGTGACTGTAAATGTGCACAAAGAGCATCTTTAAAAGACCATTTAAAAAGTCATACAGGCGAGAAACCTTTTGCTTGCGAGATTTGTGACTACAAATGTGCACGCAGAGCAAATTTAAAAGAACATTTAAAAATGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACGCAGAGCAAATTTAAAAGAACATTTAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAACACATTTAAAAAACCATTTAAAAACTCACACAGGCGAAAAATCTTTTGTGTGTGAGATTTGTGGTTATAAATGTGCACACAGAACAACTTTAAAAACACATCTTATAACTCACACAGGCGAGAAACCTTTTGCATGTGAGATTTGTGACTATAATTGTGCTTATAAATCATCTTTAAAAGAACATTTAAGAACGCACACCGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAGATATGCACAAAGAGCATCTTTAAAAAGACATTTAAAAACTCACACAGGCGAGAAACCTTTTGAGAAACCTTTTGCTTGTGGGATTTGTGACTATAAATGTGCACAAAGAGGACATTTAAAAGAACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGATATTTGTGACTATAAATGTGCACATAGAAAATCTTTAAAAAGTCATTTAAGTACGCACACAGGCGAGAAACCTTTTTCTTGTGAAATTTGTGTCTATAAATCTGCACGCAGAGAAAATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTCGCTTGTGAGATTTGTGACTATAAATGTGCACAAAAAGCATCTTTAAAAGGCCATTTAAAAACGCACACAAGCGAGAAACTTGCTTGTGGGATTTGTGATTATAAATGTGCTGAAAGAGGATCTTTAAAACGTCATTTAAAATGTCACACTGCACGAACAAGAATCATTTAG
- Protein Sequence
- MERIDQVSQPLDNSSSHEIKVEDVKFNLEDLHHSIDIKDETESDAEQLPLEKPVRKTKKSNFICQFCGYKCAQKSKLIRHIKTHTGEKPFACEICDYKCAQRASLKRHSKTHTGEKPFACEICDYKCAQRASLKRHSKTHTGEKPFACEICEYKCSQRGNLKDHLRTHTGEKPFACEICDYKCALRASLKGHIRTHTGEKPFACEICDYKCAQRTSLRDHLRTHTGEKPFACEICDYKCVQRGHLKEHLKTHTGEKPFSCEICDYKCARRPNLKKHLKSHTFEKLFACEICDCKCAQRASLKDHLKSHTGEKPFACEICDYKCARRANLKEHLKMHTGEKPFACEICDYKCARRANLKEHLKTHTGEKPFACEICDYKCAQRTHLKNHLKTHTGEKSFVCEICGYKCAHRTTLKTHLITHTGEKPFACEICDYNCAYKSSLKEHLRTHTGEKPFACEICDYRYAQRASLKRHLKTHTGEKPFEKPFACGICDYKCAQRGHLKEHLRTHTGEKPFACDICDYKCAHRKSLKSHLSTHTGEKPFSCEICVYKSARRENLKEHLKTHTGEKPFACEICDYKCAQKASLKGHLKTHTSEKLACGICDYKCAERGSLKRHLKCHTARTRII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292029;
- 90% Identity
- -
- 80% Identity
- -