Rmor029568.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796659.1:66738870-66742868[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.4 4.8e+04 -3.6 0.0 29 40 56 67 48 74 0.74 2 7 0.013 4.3e+02 3.0 0.2 18 31 155 168 142 182 0.76 3 7 2.3e-06 0.075 15.0 0.0 21 48 216 243 210 248 0.85 4 7 0.011 3.7e+02 3.2 0.0 23 52 349 378 344 380 0.84 5 7 7.1e-05 2.4 10.2 0.3 21 51 403 433 400 435 0.87 6 7 0.021 6.9e+02 2.3 0.1 21 44 431 454 427 459 0.89 7 7 0.00037 12 7.9 0.0 21 46 459 484 451 486 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGAACAAAAATATGTGttggtttaattgattttccTATCATTTGCCGTATATGTTTaagtaaaacaaatttaaaaccatTTGAACAAACCAACTTATTAAATTTGTTCAGAAATATTACTAATATTCAAATTGAATCTGAAGATATTTTACCAAGGAATGTTTGTGTTGCATGTATTAATCAACTGGAAGAAATTAATTCCtttattaatttatctaaaattaatGATGCGAAACTAAAGGAAACTGTTCGAATAAGCAAGTTAGAGCCTTATGATGAGAGACCTGATTCAGAATCAGATGTAGCAGATGATCCATCTGGACATTTGGAATTTGAAGATAACTGTGACATTAAAATTGAATTATGTGAAAATAAGTTTGCTGAGGGGTGTAACGCTGTAGAATCGATATCGGCAGAGTCAAAGGAAAGTAGAAAAGCAAACAAAACATCAACAAGGCATTCAACAAAAAGTCAACCCTCAAAATGTGATATATGTAGTGAATATTTTAGTACAAAAAGTAAATTGACGGAAcatcaaaagaaaaattccagTTGTAGAACTAAGCAATATAAATGTATGAATTGCGAAAAAGCTTTCTTTACAAAATTTAGACTGAATCTTCACATGAGATCTCATACGAAAGAAACACCATTTGAAtgcaaaatttgtttaaaaaaatttagacaTTCTACAAATCTAAAAAGACATGATGATATTGTCCACAAAGGTTTAAAACCGTTCAAATGCGAAGTTTGTGGAAAAGAATATTCAAGATTAGCAACAAGAAATGAACATATGTACATCCATAGTGGTGAACGTCCATATATTTGTGTTTGTTGTGGAAAATCTTTCCGAACTCATTCCAGTCATTTTTCCCATATGTATTgccacaaaaaaaataatggtgAAATTTCTGAAAGTGTAATGAAGGTAAAAAAGTCGCAAACCTCAGATTTTTCTTCAGTAGAGTGTAACACGTGTAACAAAAGTTTTTCGTCTAAGTCGGCTGTTTTCCAACATTTACAGTTACATGGTGAAAAACAGTTCTTGTGCACCATTTGCGGTAAAGCCTTTGCACGGAAACGTCAGTTGGAGGATCATTTGAAAATACATACAGGAGAGAAACCTTACGTATGcaaatattgtggaaaaaatttcAGACTTCTGAGTGGCTACAAAAGTCACGTTTTAGTTCATACAGGAGAGAAACCTTACCAGTGCAAAATTTGTCATAAAAATTTTGCACAATCCATCCACTTAAGAACGCATATGAGAGTTCATACAGGAGAAAAACCATATAAGTGTACTTTCTGTGGAAAAACTTTTGCACAAAATTGCAATTTGAAAGTTCATAATAGGATCCACACAGGTGAAACCCCTTACCATTGTTCAATTTGTGGAATGACGTTTATCGATTCAAGCAACATgaagaaacatttaaaaatacatgtttaa
- Protein Sequence
- MERTKICVGLIDFPIICRICLSKTNLKPFEQTNLLNLFRNITNIQIESEDILPRNVCVACINQLEEINSFINLSKINDAKLKETVRISKLEPYDERPDSESDVADDPSGHLEFEDNCDIKIELCENKFAEGCNAVESISAESKESRKANKTSTRHSTKSQPSKCDICSEYFSTKSKLTEHQKKNSSCRTKQYKCMNCEKAFFTKFRLNLHMRSHTKETPFECKICLKKFRHSTNLKRHDDIVHKGLKPFKCEVCGKEYSRLATRNEHMYIHSGERPYICVCCGKSFRTHSSHFSHMYCHKKNNGEISESVMKVKKSQTSDFSSVECNTCNKSFSSKSAVFQHLQLHGEKQFLCTICGKAFARKRQLEDHLKIHTGEKPYVCKYCGKNFRLLSGYKSHVLVHTGEKPYQCKICHKNFAQSIHLRTHMRVHTGEKPYKCTFCGKTFAQNCNLKVHNRIHTGETPYHCSICGMTFIDSSNMKKHLKIHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290625;
- 90% Identity
- iTF_01290625;
- 80% Identity
- iTF_01290625;