Basic Information

Insect: Rhagium mordax
Gene Symbol: Zfpm1
Assembly: GCA_963680705.1
Location: OY796659.1:46529422-46532520[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.15 17 7.9 0.0 2 23 652 674 651 674 0.92

2 12 0.00092 0.1 14.9 1.0 1 23 682 704 682 704 0.98

3 12 0.0011 0.12 14.7 1.4 2 23 707 728 706 728 0.97

4 12 0.053 6 9.3 2.5 1 23 734 756 734 756 0.80

5 12 0.00034 0.039 16.2 4.8 2 23 763 784 762 785 0.95

6 12 0.00016 0.018 17.3 2.3 3 23 823 844 822 844 0.97

7 12 0.059 6.7 9.2 0.1 2 23 860 880 859 880 0.96

8 12 0.00035 0.039 16.2 1.4 1 20 886 905 886 908 0.92

9 12 0.00081 0.092 15.0 0.1 1 23 916 938 916 938 0.99

10 12 0.014 1.5 11.2 5.0 1 23 944 966 944 966 0.97

11 12 1.3e-06 0.00015 23.9 3.5 1 23 972 994 972 994 0.98

12 12 0.0028 0.32 13.3 7.0 1 23 1000 1022 1000 1023 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.15	17	7.9	0.0	2	23	652	674	651	674	0.92
2	12	0.00092	0.1	14.9	1.0	1	23	682	704	682	704	0.98
3	12	0.0011	0.12	14.7	1.4	2	23	707	728	706	728	0.97
4	12	0.053	6	9.3	2.5	1	23	734	756	734	756	0.80
5	12	0.00034	0.039	16.2	4.8	2	23	763	784	762	785	0.95
6	12	0.00016	0.018	17.3	2.3	3	23	823	844	822	844	0.97
7	12	0.059	6.7	9.2	0.1	2	23	860	880	859	880	0.96
8	12	0.00035	0.039	16.2	1.4	1	20	886	905	886	908	0.92
9	12	0.00081	0.092	15.0	0.1	1	23	916	938	916	938	0.99
10	12	0.014	1.5	11.2	5.0	1	23	944	966	944	966	0.97
11	12	1.3e-06	0.00015	23.9	3.5	1	23	972	994	972	994	0.98
12	12	0.0028	0.32	13.3	7.0	1	23	1000	1022	1000	1023	0.96

Sequence Information

Coding Sequence: ATGGACTCAACAAACATAATTTGTCCTGTTTGTACCTTATATCTAAGGCCTGGTATAACTTTAAAACAACATTTATCCTCGCACCCAAAACAAAAAGTAATAGAAGCCTTGGTAAAACTATCTGGAGTTGAGGAAACACAGAAAGTACAAAATGTGCCTCCTCAATCTGAAATAAATGCTGTTGGTAGCTCACAAGTTAACTCTGCTATAGTCAATCAGTCATGGAACCAAACACCTCCGAGTCAGCTGGGGCCGCCACCTCCCATAAATCCCATACACGGTAACCACGTTTTTATATATCAACAAAGTATGAGTACCACTTCTCCACAACCGAATGTACTAAATGTTAATCCACTTTCACAGCAATATGTTTATCCGACAGTTTTCAATCCTCAAATGATGCCATATGTTTATCAACAACAACAAGTAATAATGTCTAGCAATTCTCTGCCCCCTCATATACGAGCGCTTCCCTTTGAATTACCTAGTTCGTCTCAAACAAGTGTACCAGAGGAGTCAGTTCAAAATGAAAATGAGAATAACCAGTTGGAAGATAACAGGATTATTGAAGTTCAAGACAATAATGAAGAATCTGGTCAACCTGAACCACTCATTAAAGAAAGCTTTGCCATTACAACTTCCGAGGAACCACTTATAATTAAAAAGCAGGAAATAATTGATGTAACCAACAATGATGTAAAAACTatggaagattttgaaaatgaacAACTAGTACTGAATGAAATACCACCCGAAGTATATAATAATGAAAGTAATGGAGATTATGATCATGATCATGTTGATCATGAAGAGTGTATTGGGTCACCTCTTTCACGGTCCAATTCTGAATGGGGATTCCATTCAGAATTAAACAAAGCATGTCAAACTCAAATTACGACCAATACCTCACCTAGATCTCAGATTTTAGAGGATGAAGATGAGGTATTAGTAGATAATCAAGATAATCATGAAGACCAACCCgagtatttttatattaaccAACAGAATGAGGAATATATTAAACCTCAAAATGATGAACAACAGAATAACATTATACCATATACAACAGTTAAGGTAAATACAGACACATATGAGCAATCTGAACCGATTTTTACTTCAGCAAATATTCTACATGGTGGTGACCAATTAGATTTTGTAAATATGGAAGATATTGTTATTATAAGTGATTTTTCTACAAATCAAGTTATTTCACAagtagaaaattttgaaaatacttcGCCAGATAGACCTGGGGTTTTAATGACCATTGGAGATATTGTGGATCAGcccaaaaatgattttattgaaCAAAGAGACCTAGAAGAAAGTATGTCGAGGGAAAGCTCACATGTGAACATAAGGTCGGATGAAAGAATGCCAGCACGTGGTGAATTATCTGGACAGGAGAGTATTGGAGGTGCCAGTGATATAACATGGAATCGAATGCAATATCAGGAAGGTAGTTCAGGTATGTCTCACTCTTATGATTTAATTGGTAGAGAAACGTGGGAAGCTTCAGATAGTGATAGCGTGGAAGTACCTGCATTGCAAAGGCGACTACCAATGGAGTTGGATTACCAGCAAAATGAGTTTAACGATAATGAAAATGACACGCCTACTATCGTTAGCTATTCTGGCCCGCCTCTAAATTTCAAATGCTCAACTTGTGGAGATGCCTTTTCCTGTTCAAAGGAAAGGAAAGAACATGAGATTGAAAAACACCAAGAGAAATCTATTAAAACCAATATAATAGGATCTGAGATTGGaaaaaagaaagtaaaaaaactcgtGGTAAAGTTCAAATCTGACAAGATTGAgagtgaaaataattttgataatgtATTTACCAATAAACTGAAGTTGGAAAGTGCCGTTGAAGCACAAGCAAATGTAGCAGTGGACAATCAGATCAAAATGGATGAAATCAATTTAGAATTAAAAGATTTGAAAACAGTTTGTCCAATTTGTGACAGTGTTGTTGAAAATGCTAGGGCCTTAAAAGTACACAAACTAGAGGTTCATAAGGAAAGTGCTGATGTACGACATAAGTGTTTGACATGTGGTGAAGCATTTCCAAATGAGTATAAATATACAGAGCATCTTAAAGTACATCCTCTGGAATGTAGATTATGTGGCAAGCTGTTTTATAGACGTCAGAATATTCAGTTACATATGAAGAGGCATCTTGGGTTAAAGCCATATAAGTGTGAAATTTGTCAGAAATCATTTGTAACTAGACAAAAACATGATGAACATAAAAATATTCACACCGGCGAGACtcctattaaatgtaatttgTGTGAGGAAACGTTTAGAAGACATTCAAATTTAGTTCAGCACCGTAATTATCATcattttcaaatgaaaaaaaaagttaaagattACATCTGTCAGTGTGGAGATATTTTCCATTCGAAAAAAAAACTAGCATGGCATAAAGAAATTCATGATTCTAAACCTAAGGCCTGTACCCAATGTAGCGAAAAATTTATCCATATGTCAAGTTTAACAAGGCACATGCGTCGAGCTCATAATGAAAAGTTCCTGCCACAAGTGGATAGAGAAGATGAAAATGTGGAGTGTCCTATATGCAAAGGAACTTACTTAAGATCTTCTCTCGAGGTACATATTCGAAATCATAGCGGACTGAGACCGTTcacttgtttaatttgcaacaAAGATTTTACCACCAAATGGAATCTTAAATTACACAAGTGGACGCATGCTAGTCGTACTTCGAAACCCTTCAAATGTGATCAGTGCAAGGGTGCTTTCATTAGAGAAGCTGATTACATAGCGCACATGAACTCTCACAAAAGCGTGCGTCCATATACATGTAATCATTGTGGAGCTCAGTTTATTAGAAAGTATAACTGCTTAAGACATGTTAAGGAgcatgaaaataataaaacatttagtTGTCAGGTTTGTGGAAAGTCCTTCCATAGatcatattatttaaaagatCACATGCGTGTACATAGCGGTATTCGGCCCTACTCATGTCATATTTGTGGTAAAACTTCAACAACTAAATCTAATCATAATAAACATGTACAAATTCACCATGCTAGAGAACCAGTCAGTAccgaaaattaa
Protein Sequence: MDSTNIICPVCTLYLRPGITLKQHLSSHPKQKVIEALVKLSGVEETQKVQNVPPQSEINAVGSSQVNSAIVNQSWNQTPPSQLGPPPPINPIHGNHVFIYQQSMSTTSPQPNVLNVNPLSQQYVYPTVFNPQMMPYVYQQQQVIMSSNSLPPHIRALPFELPSSSQTSVPEESVQNENENNQLEDNRIIEVQDNNEESGQPEPLIKESFAITTSEEPLIIKKQEIIDVTNNDVKTMEDFENEQLVLNEIPPEVYNNESNGDYDHDHVDHEECIGSPLSRSNSEWGFHSELNKACQTQITTNTSPRSQILEDEDEVLVDNQDNHEDQPEYFYINQQNEEYIKPQNDEQQNNIIPYTTVKVNTDTYEQSEPIFTSANILHGGDQLDFVNMEDIVIISDFSTNQVISQVENFENTSPDRPGVLMTIGDIVDQPKNDFIEQRDLEESMSRESSHVNIRSDERMPARGELSGQESIGGASDITWNRMQYQEGSSGMSHSYDLIGRETWEASDSDSVEVPALQRRLPMELDYQQNEFNDNENDTPTIVSYSGPPLNFKCSTCGDAFSCSKERKEHEIEKHQEKSIKTNIIGSEIGKKKVKKLVVKFKSDKIESENNFDNVFTNKLKLESAVEAQANVAVDNQIKMDEINLELKDLKTVCPICDSVVENARALKVHKLEVHKESADVRHKCLTCGEAFPNEYKYTEHLKVHPLECRLCGKLFYRRQNIQLHMKRHLGLKPYKCEICQKSFVTRQKHDEHKNIHTGETPIKCNLCEETFRRHSNLVQHRNYHHFQMKKKVKDYICQCGDIFHSKKKLAWHKEIHDSKPKACTQCSEKFIHMSSLTRHMRRAHNEKFLPQVDREDENVECPICKGTYLRSSLEVHIRNHSGLRPFTCLICNKDFTTKWNLKLHKWTHASRTSKPFKCDQCKGAFIREADYIAHMNSHKSVRPYTCNHCGAQFIRKYNCLRHVKEHENNKTFSCQVCGKSFHRSYYLKDHMRVHSGIRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370122;
90% Identity: iTF_01370122;
80% Identity: -