Rmor009244.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:102913126-102918913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.59 67 6.0 1.3 2 23 51 72 50 72 0.94 2 18 1.1 1.3e+02 5.2 2.2 1 23 78 100 78 100 0.95 3 18 0.038 4.3 9.8 2.8 1 23 106 128 106 128 0.91 4 18 0.00058 0.066 15.5 3.0 1 23 134 157 134 157 0.98 5 18 0.00059 0.067 15.5 1.5 1 23 169 192 169 192 0.96 6 18 7.3e-05 0.0083 18.3 0.3 3 23 203 223 201 223 0.97 7 18 2.4e-05 0.0027 19.9 0.1 1 23 229 251 229 251 0.98 8 18 0.00058 0.066 15.5 2.1 1 23 257 279 257 279 0.98 9 18 0.0011 0.12 14.7 0.1 1 19 285 303 285 306 0.87 10 18 0.056 6.4 9.3 0.1 2 23 411 432 410 432 0.94 11 18 1.7 2e+02 4.6 6.1 1 23 438 460 438 460 0.97 12 18 0.0045 0.51 12.7 1.9 1 23 466 488 466 488 0.91 13 18 0.00017 0.02 17.2 2.5 1 23 494 517 494 517 0.98 14 18 0.00029 0.034 16.4 1.7 1 23 529 552 529 552 0.94 15 18 0.022 2.5 10.5 3.4 3 23 563 583 562 583 0.99 16 18 7e-06 0.00079 21.5 0.2 3 23 591 611 589 611 0.97 17 18 7.6e-07 8.6e-05 24.6 0.8 1 23 617 639 617 639 0.99 18 18 0.00063 0.072 15.4 0.0 3 21 647 665 646 666 0.94
Sequence Information
- Coding Sequence
- ATGTTCCCATCACATGCTGAAAATAAGAAAAAGACTAGGAGAAAAAGGCGTGTGTCCACtgagaaattaaagaaaacacgTAGATCCAGACGCAATGCGGAGAAACCGAAGAAAAAAGTTGTAGAGCCTATTAAATTGGAAGTGCCTTTGCGGTGCTGTTATTGCAGTGAagtttactataataatattgactACGCTCTGCATTCCAAGGAACATAATAAAGACGAGAGGTATTCCTGCCACTTATGTGATTACACAAATACATCTAAATATCGCACGGAGGCGCATGTTCGAGCTCATGAGGGCTCTACGAAATATAAATGTGAGATCTGCAACAAACCTTTTAACATTAGTACCCACGCTAAAGAGCACAAATACTTCCATACTGGCGAGAAACCTTTTCAGTGCGAAATTTGCGGAAAACACTTTATGTTTTCTAGGATTTTAACAAAACATCGTCGTACCGCACATTATGAAATCATGTTTGGTAAACCTTTGGCAAAATACGATTGTAAAGTTTGCAATAAACACTACGAATCTCTACCCGGACTTCAACGGCATATGTACAGCAATCACAACGACACTGGTGAAGATTGGTCAGTTATATGTGACATTTGCGGAAAAAAAATTGCCACCAAAGAGAAACTAAAGTATCATTTAAGAACACATACTGGTGATAAACCATTTCCTTGCCCAGCCTGCCCGAAGAGATTTCCTAAAAAGGATCAACTTAAAGAACACGAGCGAGTACATACTGGCGAGAAACCGTTTGTTTGCATGTATTGCGGCAAAAATTTTGGCCACAGAGCACCGTACAGGTACCACATAAAGACTCACACTGGAGAGCGGCCTTATACATGCCCCATTTGTGGAAAAGGCTTTATATCTAAATCAGCTAAAGAAGGGCACGCAAATAGTTGCTTCAAAAAgttaaaacctttgaaaagcccgaaaaaaattaaagaggaagATGAATCAGAAAATGAATGGATACCTAGGGAGGAAAAACTCAGGAAGGAAAAAATTAGGAAAGGTAAAATTAGAAAAGAAAAAgtgaagaaagaaaagaaatcgAAACAAGACGGAGACAAGccaccaaaaattaaaaaaccaaagAAAAAAGGAGACAACGCAGAGAAAGAAAAAAAGATTCGTAAAATTCGCAAAAGTGATAAACCTAGACGTATGGTTGAGGAACATCCACCACCAATGGAACTTGAGGAACCCATAGAGTGTGAGGTTTGTAGTGAAACTTACAAAAATAATGTCGCTTTCGCCCTGCATTCCATTAGCCACAGTGACGACGGAAAATATCACTGTCATTTATGTACTTACAGAAATGCTTCCAAATATCATCTAGAAATGCATGTACGAGCCCATGAAGGTGCAACAAAATATAAATGCGAAATATGTAATAAAGCATTTACAGTCAGCACTCATGCTATAGAACACAAGTATTTTCATACTGGGGAGAAACCATTTCAGTGCGAAATTTGTGGCAAACATTTTATGTTTTCTTGGTTTTTGGCCTCCCATCGTCGAACTTCGCATTATGAAATTTTGACTGGCAGTCCTTTGGTGAAATTTGACTGCACTATCTGCAATAAGCATTATGCTTCTGCATCGGGCTTAAGAAGACATAATTTAAAGAATCACAATGAAGCAGGAATTGACACTTCCGTTTTATGCGACATTTGTGGAAAAAGACTCTCTAGCagagaaaaattgaaatttcatcATAGAACTCACACTGGCTACAAGCCATATGGTTGCCAGATTTGTCCGAAGAGTTTTTCGAAGAAGGAGCAACTGATAGAGCATGTACGGGTTCACACTGGTGAGAAACCATACGTTTGTAAATATTGTGGAAAAGCTTTTACGCAAAGAACTCCTTTAAGAATTCACGAAAGAACACATACCGGAGAACGGCCTAACATCTGTCCAATTTGTGGTAAAGGTTTTGTTTCCAAAACCGCTGTAGAGAGTCATATTAAGAGTTGTTATAATACACCCCAAGTATTAATTCAAGGTCCAATTCAATACCCATATTATCCAGCAAGCACTACACCCATGACAGCAACCGACCCAACTGACAGTGAACATAAATTTTCTATTACCAATACTTTTGTCGAACCCAGGtcataa
- Protein Sequence
- MFPSHAENKKKTRRKRRVSTEKLKKTRRSRRNAEKPKKKVVEPIKLEVPLRCCYCSEVYYNNIDYALHSKEHNKDERYSCHLCDYTNTSKYRTEAHVRAHEGSTKYKCEICNKPFNISTHAKEHKYFHTGEKPFQCEICGKHFMFSRILTKHRRTAHYEIMFGKPLAKYDCKVCNKHYESLPGLQRHMYSNHNDTGEDWSVICDICGKKIATKEKLKYHLRTHTGDKPFPCPACPKRFPKKDQLKEHERVHTGEKPFVCMYCGKNFGHRAPYRYHIKTHTGERPYTCPICGKGFISKSAKEGHANSCFKKLKPLKSPKKIKEEDESENEWIPREEKLRKEKIRKGKIRKEKVKKEKKSKQDGDKPPKIKKPKKKGDNAEKEKKIRKIRKSDKPRRMVEEHPPPMELEEPIECEVCSETYKNNVAFALHSISHSDDGKYHCHLCTYRNASKYHLEMHVRAHEGATKYKCEICNKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTICNKHYASASGLRRHNLKNHNEAGIDTSVLCDICGKRLSSREKLKFHHRTHTGYKPYGCQICPKSFSKKEQLIEHVRVHTGEKPYVCKYCGKAFTQRTPLRIHERTHTGERPNICPICGKGFVSKTAVESHIKSCYNTPQVLIQGPIQYPYYPASTTPMTATDPTDSEHKFSITNTFVEPRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00166265;
- 90% Identity
- -
- 80% Identity
- -