Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000275.1:119498-128172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.25 19 6.7 0.2 2 23 35 56 34 56 0.92

2 18 0.7 54 5.3 2.2 1 23 62 84 62 84 0.95

3 18 0.018 1.4 10.3 2.2 1 23 90 112 90 112 0.92

4 18 0.0086 0.66 11.3 2.6 1 23 118 141 118 141 0.98

5 18 0.00097 0.075 14.3 1.5 1 23 153 176 153 176 0.96

6 18 4.6e-05 0.0035 18.5 0.3 3 23 187 207 185 207 0.97

7 18 5.3e-06 0.0004 21.4 0.3 1 23 213 235 213 235 0.95

8 18 0.00017 0.013 16.7 2.1 1 23 241 263 241 263 0.98

9 18 0.00068 0.052 14.8 0.1 1 19 269 287 269 290 0.87

10 18 0.086 6.6 8.2 0.0 2 23 349 370 348 370 0.90

11 18 1.1 84 4.7 6.1 1 23 376 398 376 398 0.97

12 18 0.0053 0.41 12.0 1.9 1 23 404 426 404 426 0.91

13 18 0.00011 0.0084 17.3 2.5 1 23 432 455 432 455 0.98

14 18 0.00019 0.014 16.6 1.7 1 23 467 490 467 490 0.94

15 18 0.014 1.1 10.7 3.4 3 23 501 521 500 521 0.99

16 18 4.4e-06 0.00034 21.7 0.2 3 23 529 549 527 549 0.97

17 18 4.8e-07 3.7e-05 24.7 0.8 1 23 555 577 555 577 0.99

18 18 0.0004 0.031 15.5 0.0 3 21 585 603 584 604 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.25	19	6.7	0.2	2	23	35	56	34	56	0.92
2	18	0.7	54	5.3	2.2	1	23	62	84	62	84	0.95
3	18	0.018	1.4	10.3	2.2	1	23	90	112	90	112	0.92
4	18	0.0086	0.66	11.3	2.6	1	23	118	141	118	141	0.98
5	18	0.00097	0.075	14.3	1.5	1	23	153	176	153	176	0.96
6	18	4.6e-05	0.0035	18.5	0.3	3	23	187	207	185	207	0.97
7	18	5.3e-06	0.0004	21.4	0.3	1	23	213	235	213	235	0.95
8	18	0.00017	0.013	16.7	2.1	1	23	241	263	241	263	0.98
9	18	0.00068	0.052	14.8	0.1	1	19	269	287	269	290	0.87
10	18	0.086	6.6	8.2	0.0	2	23	349	370	348	370	0.90
11	18	1.1	84	4.7	6.1	1	23	376	398	376	398	0.97
12	18	0.0053	0.41	12.0	1.9	1	23	404	426	404	426	0.91
13	18	0.00011	0.0084	17.3	2.5	1	23	432	455	432	455	0.98
14	18	0.00019	0.014	16.6	1.7	1	23	467	490	467	490	0.94
15	18	0.014	1.1	10.7	3.4	3	23	501	521	500	521	0.99
16	18	4.4e-06	0.00034	21.7	0.2	3	23	529	549	527	549	0.97
17	18	4.8e-07	3.7e-05	24.7	0.8	1	23	555	577	555	577	0.99
18	18	0.0004	0.031	15.5	0.0	3	21	585	603	584	604	0.94

Sequence Information

Coding Sequence: ATGGGACACAGTAAAAGGAAAAACCGAACGTGTAGGTCCAAAAGCAAGACCGATAAACCCAAGAAGGCAGCAGTGGAACCTCTCAAACTAGACGTGCCTCTAAAATGCAGTTTTTGTAACGAGGCGTACTACAGCAACGTCGAATACGCGCTACATTCCATACAACACAGTAAAGACGACAGGTACTCGTGTCACCTGTGCGACTACACGAACACCTCCAAGTACAGGACCGAAGCTCACGTGAGAGCCCACGAGGGGTCCACGAAGTACAGATGCGAGATCTGCAACAAGCCGTTCAACATCAGCACGCACGCGAGAGAGCACACGTACTTCCACACCGGAGAGAAGCCCTTCCAGTGCGATATTTGCGGGAACCACTTCATGTTCTCGAGAATACTGACGAAGCACCGCCGCACCGCCCACTACGAGGTCATGTTCGGCAAGCCGCTGGCCAAATACGACTGTAAGGTTTGCAGCAAACATTACGAGTCGTTGCCCGGCCTGCAGAGGCACATGTACAGCAATCACAACGATACAGGCGAAGATTGGTCGGTAATATGCGACATATGCGGGAAGAAGATAGCGACGAAGGAGAAACTGAAGTACCACTTGAGGACCCATACGGGAGACAAGCCGTTTCTTTGCCCCGTGTGTCCCAAAAGATTTCCGAAAAAAGATCAGCTTAAGGAACACGAAAGGGTACACACGGGAGAGAAGCCTTTTATCTGCATGTATTGCGGGAAAAGTTTTGGTCACAGGGCTCCGTATCGGTACCACATCAAGACTCACACAGGCGAAAGACCTTACACCTGTCCCATTTGCGGTAAAGGCTTCATTTCTAAATCGGCTAAAGAAGGTCACGCAAATAGTTGCGTCAAAAAAAAGGAAAAACCGCCTAAACCGGAGGGGGCACGAATAAAGCGACCGAAGAAGCAGGGCAATAAGGAGGAAAAAGACAAGAAAGCGCGGAGAACCCGCAAAACCGACAGACCGAAGAGGATAGCCGAAGAGCATCCGCCCCCCATGGAACTCGAAGAGCCCATCGAGTGCGACGTTTGCAGCGAGACGTACAGGAACAACGTCGCCTTCGCGCTACACTCCATAGCGCACAGCGAGGACGGGAAATACCACTGCCACCTGTGCACCTACAGGAACGCCTCCAAGTATCACCTGGAGATGCACGTCAGGGCCCACGAGGGCGCGACGAAGTACAAGTGCGAGGTCTGCAACAAGGCCTTCACGGTCAGCACGCACGCCATCGAGCACAAGTACTTCCACACGGGCGAGAAGCCCTTCCAGTGCGAGATCTGCGGCAAGCACTTCATGTTCTCGTGGTTCCTCGCGTCTCACCGGCGCACCTCCCACTACGAGATACTCACCGGCAGTCCCCTGGTGAAGTTCGACTGCACCATATGCAACAAGCACTACGCGTCCGCGTCCGGACTGAGGAGGCACAACCTGAAGAACCACAACGAGGCCGGCATAGACACGTCCGTGTTGTGCGACATATGCGGGAAGAGGCTGTCCAGCAGGGAGAAGTTGAAGTTCCACCACAGGACCCACACCGGCTACAAGCCGTACGGGTGCCAGATTTGCCCAAAGAGTTTCTCCAAGAAGGAGCAGTTAATTGAGCACGTGCGGGTGCACACCGGCGAGAAGCCATACGTTTGCAAGTACTGTGGGAAAGCTTTCACGCAGAGAACTCCGCTGAGAATTCACGAGAGGACGCACACGGGAGAGAGGCCGAATATTTGTCCGATTTGCGGTAAGGGTTTCGTGTCCAAAACCGCCGTGGAGAGCCATATTAAGAGTTGTTACAACACGCCCCAGGTGTTGATCCAAGGTCCGCTTCAGTACCCTTACTATCCCGCATCGACTACTCCTATGACGCCCATGATTGACCAGACAGAAGTTGAACATAAATTTTCTTCTACGAATGCATTTCTTGAACCTAAAACATGA
Protein Sequence: MGHSKRKNRTCRSKSKTDKPKKAAVEPLKLDVPLKCSFCNEAYYSNVEYALHSIQHSKDDRYSCHLCDYTNTSKYRTEAHVRAHEGSTKYRCEICNKPFNISTHAREHTYFHTGEKPFQCDICGNHFMFSRILTKHRRTAHYEVMFGKPLAKYDCKVCSKHYESLPGLQRHMYSNHNDTGEDWSVICDICGKKIATKEKLKYHLRTHTGDKPFLCPVCPKRFPKKDQLKEHERVHTGEKPFICMYCGKSFGHRAPYRYHIKTHTGERPYTCPICGKGFISKSAKEGHANSCVKKKEKPPKPEGARIKRPKKQGNKEEKDKKARRTRKTDRPKRIAEEHPPPMELEEPIECDVCSETYRNNVAFALHSIAHSEDGKYHCHLCTYRNASKYHLEMHVRAHEGATKYKCEVCNKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTICNKHYASASGLRRHNLKNHNEAGIDTSVLCDICGKRLSSREKLKFHHRTHTGYKPYGCQICPKSFSKKEQLIEHVRVHTGEKPYVCKYCGKAFTQRTPLRIHERTHTGERPNICPICGKGFVSKTAVESHIKSCYNTPQVLIQGPLQYPYYPASTTPMTPMIDQTEVEHKFSSTNAFLEPKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01290598; iTF_00722306;
90% Identity: -
80% Identity: -