Rmor047082.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:6580037-6589171[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 2.9 3.3e+02 3.8 2.6 1 23 201 223 201 223 0.98
2 40 0.00039 0.044 16.0 2.9 1 23 232 254 232 254 0.99
3 40 0.0047 0.53 12.6 2.6 1 23 263 285 263 285 0.99
4 40 0.63 72 5.9 4.9 1 23 294 316 294 316 0.97
5 40 0.0071 0.81 12.1 1.4 1 23 325 347 325 347 0.99
6 40 0.0008 0.091 15.1 4.0 1 23 356 378 356 378 0.99
7 40 0.00037 0.042 16.1 0.8 1 23 387 409 387 409 0.98
8 40 0.00014 0.016 17.5 2.8 1 23 418 440 418 440 0.99
9 40 0.63 72 5.9 4.9 1 23 449 471 449 471 0.97
10 40 0.12 14 8.2 6.9 1 23 480 502 480 502 0.99
11 40 0.0008 0.091 15.1 4.0 1 23 511 533 511 533 0.99
12 40 0.25 29 7.2 2.3 1 23 542 564 542 564 0.98
13 40 0.0011 0.12 14.6 1.1 1 23 573 595 573 595 0.99
14 40 3.2e-05 0.0037 19.4 1.4 1 23 604 626 604 626 0.99
15 40 0.63 72 5.9 4.9 1 23 635 657 635 657 0.97
16 40 0.12 14 8.2 6.9 1 23 666 688 666 688 0.99
17 40 0.00068 0.078 15.3 4.3 1 23 697 719 697 719 0.99
18 40 6.9e-06 0.00079 21.5 0.6 1 23 728 750 728 750 0.99
19 40 0.0027 0.31 13.4 3.9 1 23 759 781 759 781 0.99
20 40 0.00018 0.02 17.1 0.7 1 23 790 812 790 812 0.98
21 40 0.028 3.2 10.2 0.7 1 23 821 843 821 843 0.99
22 40 0.0015 0.17 14.2 4.0 1 23 852 874 852 874 0.99
23 40 0.00018 0.02 17.1 0.7 1 23 883 905 883 905 0.98
24 40 0.027 3 10.3 1.0 1 23 914 936 914 936 0.99
25 40 7.5e-05 0.0085 18.3 3.4 1 23 945 967 945 967 0.99
26 40 0.63 72 5.9 4.9 1 23 976 998 976 998 0.97
27 40 0.12 14 8.2 6.9 1 23 1007 1029 1007 1029 0.99
28 40 0.00068 0.078 15.3 4.3 1 23 1038 1060 1038 1060 0.99
29 40 7.4e-06 0.00084 21.5 0.7 1 23 1069 1091 1069 1091 0.99
30 40 0.0027 0.31 13.4 3.9 1 23 1100 1122 1100 1122 0.99
31 40 5.3e-05 0.006 18.8 0.9 1 23 1131 1153 1131 1153 0.98
32 40 0.028 3.2 10.2 0.7 1 23 1162 1184 1162 1184 0.99
33 40 0.0015 0.17 14.2 4.0 1 23 1193 1215 1193 1215 0.99
34 40 0.00014 0.016 17.4 1.2 1 23 1224 1246 1224 1246 0.99
35 40 0.00049 0.056 15.7 5.7 1 23 1255 1277 1255 1277 0.99
36 40 2.1e-05 0.0024 20.0 1.0 1 23 1284 1306 1284 1306 0.99
37 40 0.00035 0.04 16.2 1.0 1 23 1315 1337 1315 1337 0.98
38 40 1.6 1.9e+02 4.6 1.2 13 23 1358 1368 1349 1368 0.79
39 40 0.64 72 5.9 3.2 3 23 1377 1399 1376 1399 0.93
40 40 1.2 1.4e+02 5.0 2.2 1 23 1408 1430 1408 1430 0.98

Sequence Information

Coding Sequence
ATGGAGTATCGCAAATTAACAGGTGCAGACGTCATAGAAATCGCAGACGTACTACAGTCGACGTCGATGCGTGCATCGAACGTAGAAGGAGATGGTAATACGATTGACAGTATCAGTACAGAAGAAACATTTTGTGTCGATATGGGCAACGCTGACGAACGAGTTGGACACGAAAATGGTAGTATTGGCAACATGGAGAAACAAAAGCATGTTGAAATAAAAGCGGATCAACATGGTTTTGACGgATGTTCAGATGGTGTTATTTCCTCACAACCAATTACTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAAAGGGGTCCATTAAGAACTACCAGTAAACACAAACTGGTACACAAAACATATTTAGAAAATCTTAAAAGACATCGAGAACATCATGTGAAtcctacagaaataaaaatgtactgCTGTGACTGCTGTTCTTATCGGACAAAATACAGAAAGTGTTTTAAAAGACATTCTCTAAAGCACAAGAATCCATCGGGGGTACTAATATACCGGTCCAAGTCCTATTCACAACAAACAAAGTATCGACGTAGTCTTATCAATAAGAGCACCTCAGAAATAACAATCTACCAGTGTGGTTCTTGTTCATTTCAGACGAAACTTAAAACTGGGATCCAACACCACATGTTAACCCACAAACTCTCCACAAACACGAGGATGTATCAGTGTGATGTCTGTGAGTTTAAGACAAAACGTAAACATGACCTGCAAAGCCACATATTGACCCATAACGACCAGTCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTGAGACAAAACGTAAACATATCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCGCACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTGCGACTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAGGACGAAACATAAAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGACATGTACCAATGTGATATTTGTGAGTTTGAGACAAAACGTAAACTTAGCCTGCAAAAACATATGTTGATCCATAAAGATCTCTCAGAAGTAGAAATGTACCAATGTGATATTTGTGAGTTGAagacaaaacataaaataagCCTGAAAAGACATATGTTGACCCATAAAGATCTCCCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAGGACGAAACATAAAGAAAGCCTGCAAAGACATATGCTTACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAATGTGATATTTGTGAGTTTGAGACAAAATGTAAACTTAGCCTGCAAAAACATATGTTGATCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGGATTGTCCATTTAAGACAAAATATAAACGAAGCCTGCAAGGACATATGTTGACCCATAAAGATCTTCCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTGAAGACAAAACGTAAAATAAGCCTGAAAAGACATATGTTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGATGACCCATAAAGAACAGTCAGAaataaaaacataccagtgTGATATTTGTGGGTTAAAGACAATACGTAAACTAAACCTGCAAAGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTTTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAACACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGCCATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCTGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAGAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGCCATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAATGTGCGGCTTGTCCATTTAAGACAAAATATAAACGAAGTCTGCGAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCGCACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGATGACCCATAAAAATCAGTCAGAaataaaaacataccagtgTGATATTTGTGGGTTAAAGACAATACGTAAACTAAACCTGCGAAGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGTCTGCAAACACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGACATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAGAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTGAGACAAAACGTAAACTTAGCCTGCAAAGACATATGTTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGCATAAGACGAAACATAAACAAGACCTGCGAAAACATATGTTGACCCATAGAGACCACTCAAAAGTGTATCAGTGTGATATTTGTGAGTTTAAGACAAGACAAAAAGCAAACCTGCAAAGCCATATGTTGACCCATAAAGGCAGCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGAGTATAAGACGAAACTTAAACAAGACCTACGAAAACATATGTTGATCCATAAAGACCATTCAGAAATAGAAATGCATCAGCGTGATATTTGTGAGTTGAAGACAGAATGTAAAGAACACCTGCAAAGACATATGTTGACCCATACAGATCACTCAGGAATAGAAATGTGCCACTATGAATCTTGTGATTTTAAAACAGAACATAAATATAGCCTGGTTGAACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATATATGAGTGTGTTTCTTGTTCATATCAGACGAAATATGAAAGTTGCATGCAGGAGCACATACTAACCCACAAACTCCCCGCAGAAACAACGGACTAG
Protein Sequence
MEYRKLTGADVIEIADVLQSTSMRASNVEGDGNTIDSISTEETFCVDMGNADERVGHENGSIGNMEKQKHVEIKADQHGFDGCSDGVISSQPITTKLRGKRECSVLKRGPLRTTSKHKLVHKTYLENLKRHREHHVNPTEIKMYCCDCCSYRTKYRKCFKRHSLKHKNPSGVLIYRSKSYSQQTKYRRSLINKSTSEITIYQCGSCSFQTKLKTGIQHHMLTHKLSTNTRMYQCDVCEFKTKRKHDLQSHILTHNDQSEIEMYQCDICEFETKRKHILQRHMLTHKDLSHIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCATCPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFRTKHKESLQRHMLTHKDQSEVDMYQCDICEFETKRKLSLQKHMLIHKDLSEVEMYQCDICELKTKHKISLKRHMLTHKDLPDIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFRTKHKESLQRHMLTHKDQSEVEMYQCDICEFETKCKLSLQKHMLIHKDHSEIEMYQCADCPFKTKYKRSLQGHMLTHKDLPEIEMYQCDICELKTKRKISLKRHMLTHKDLSDIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFKTKHKESLQRHMMTHKEQSEIKTYQCDICGLKTIRKLNLQRHMLTHKDLSEIEFYQCDSCEFKTKHKESLQTHMLTHKDQSEVEMYQCDICEFKTKRKESLQSHILIHKNHSEIQMYQCAACPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFKTKHRESLQRHMLTHKDQSEVEMYQCDICEFKTKRKESLQSHILIHKNHSEIQMYQCAACPFKTKYKRSLRGHMLTHKDLSEIEMYQCDICEFKTKHKESLQRHMLTHKDLSHIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFKTKHKESLQRHMMTHKNQSEIKTYQCDICGLKTIRKLNLRRHMLTHKDLSEIELYQCDSCEFKTKHKESLQTHMLTHKDQSEVEMYQCDICEFKTKRKESLQRHILIHKNHSEIQMYQCAACPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFKTKHRESLQRHMLTHKDQSEVEMYQCDICEFETKRKLSLQRHMLTHKDQSEVEMYQCDICEHKTKHKQDLRKHMLTHRDHSKVYQCDICEFKTRQKANLQSHMLTHKGSSEIEMYQCDICEYKTKLKQDLRKHMLIHKDHSEIEMHQRDICELKTECKEHLQRHMLTHTDHSGIEMCHYESCDFKTEHKYSLVEHMLTHKDHSEIEIYECVSCSYQTKYESCMQEHILTHKLPAETTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01290579;
90% Identity
iTF_01290579;
80% Identity
iTF_01290579;