Rmor047083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:6585512-6589171[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.00032 0.037 16.3 2.9 1 23 13 35 13 35 0.99
2 39 0.0039 0.44 12.9 2.6 1 23 44 66 44 66 0.99
3 39 0.53 60 6.2 4.9 1 23 75 97 75 97 0.97
4 39 0.0059 0.67 12.3 1.4 1 23 106 128 106 128 0.99
5 39 0.00066 0.075 15.3 4.0 1 23 137 159 137 159 0.99
6 39 0.0003 0.035 16.4 0.8 1 23 168 190 168 190 0.98
7 39 0.00012 0.013 17.7 2.8 1 23 199 221 199 221 0.99
8 39 0.53 60 6.2 4.9 1 23 230 252 230 252 0.97
9 39 0.1 12 8.4 6.9 1 23 261 283 261 283 0.99
10 39 0.00066 0.075 15.3 4.0 1 23 292 314 292 314 0.99
11 39 0.21 24 7.4 2.3 1 23 323 345 323 345 0.98
12 39 0.00091 0.1 14.9 1.1 1 23 354 376 354 376 0.99
13 39 2.7e-05 0.0031 19.7 1.4 1 23 385 407 385 407 0.99
14 39 0.53 60 6.2 4.9 1 23 416 438 416 438 0.97
15 39 0.1 12 8.4 6.9 1 23 447 469 447 469 0.99
16 39 0.00057 0.065 15.5 4.3 1 23 478 500 478 500 0.99
17 39 5.8e-06 0.00066 21.8 0.6 1 23 509 531 509 531 0.99
18 39 0.0023 0.26 13.6 3.9 1 23 540 562 540 562 0.99
19 39 0.00015 0.017 17.4 0.7 1 23 571 593 571 593 0.98
20 39 0.024 2.7 10.4 0.7 1 23 602 624 602 624 0.99
21 39 0.0012 0.14 14.5 4.0 1 23 633 655 633 655 0.99
22 39 0.00015 0.017 17.4 0.7 1 23 664 686 664 686 0.98
23 39 0.022 2.5 10.5 1.0 1 23 695 717 695 717 0.99
24 39 6.2e-05 0.0071 18.5 3.4 1 23 726 748 726 748 0.99
25 39 0.53 60 6.2 4.9 1 23 757 779 757 779 0.97
26 39 0.1 12 8.4 6.9 1 23 788 810 788 810 0.99
27 39 0.00057 0.065 15.5 4.3 1 23 819 841 819 841 0.99
28 39 6.2e-06 0.0007 21.7 0.7 1 23 850 872 850 872 0.99
29 39 0.0023 0.26 13.6 3.9 1 23 881 903 881 903 0.99
30 39 4.4e-05 0.005 19.0 0.9 1 23 912 934 912 934 0.98
31 39 0.024 2.7 10.4 0.7 1 23 943 965 943 965 0.99
32 39 0.0012 0.14 14.5 4.0 1 23 974 996 974 996 0.99
33 39 0.00012 0.013 17.7 1.2 1 23 1005 1027 1005 1027 0.99
34 39 0.00041 0.046 16.0 5.7 1 23 1036 1058 1036 1058 0.99
35 39 1.8e-05 0.002 20.3 1.0 1 23 1065 1087 1065 1087 0.99
36 39 0.00029 0.033 16.4 1.0 1 23 1096 1118 1096 1118 0.98
37 39 1.4 1.5e+02 4.9 1.2 13 23 1139 1149 1130 1149 0.79
38 39 0.53 60 6.2 3.2 3 23 1158 1180 1157 1180 0.93
39 39 1 1.2e+02 5.3 2.2 1 23 1189 1211 1189 1211 0.98

Sequence Information

Coding Sequence
ATGTTAACCCACAAACTCTCCACAAACACGAGGATGTATCAGTGTGATGTCTGTGAGTTTAAGACAAAACGTAAACATGACCTGCAAAGCCACATATTGACCCATAACGACCAGTCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTGAGACAAAACGTAAACATATCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCGCACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTGCGACTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAGGACGAAACATAAAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGACATGTACCAATGTGATATTTGTGAGTTTGAGACAAAACGTAAACTTAGCCTGCAAAAACATATGTTGATCCATAAAGATCTCTCAGAAGTAGAAATGTACCAATGTGATATTTGTGAGTTGAagacaaaacataaaataagCCTGAAAAGACATATGTTGACCCATAAAGATCTCCCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAGGACGAAACATAAAGAAAGCCTGCAAAGACATATGCTTACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAATGTGATATTTGTGAGTTTGAGACAAAATGTAAACTTAGCCTGCAAAAACATATGTTGATCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGGATTGTCCATTTAAGACAAAATATAAACGAAGCCTGCAAGGACATATGTTGACCCATAAAGATCTTCCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTGAAGACAAAACGTAAAATAAGCCTGAAAAGACATATGTTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGATGACCCATAAAGAACAGTCAGAaataaaaacataccagtgTGATATTTGTGGGTTAAAGACAATACGTAAACTAAACCTGCAAAGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTTTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAACACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGCCATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCTGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAGAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGCCATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAATGTGCGGCTTGTCCATTTAAGACAAAATATAAACGAAGTCTGCGAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCGCACATAGAAATGTTCCATTGTGATATTTGTGGCTTTAAGGCAAAATGTAAAACATACCTGCAAAAACATATGTTGATCCATAAAGGCCActcagaaatagaaatgttccAGTGTACGACTTGTCCATTTAagacaaaatataaacattGCCTGCAAGGACACATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGATGACCCATAAAAATCAGTCAGAaataaaaacataccagtgTGATATTTGTGGGTTAAAGACAATACGTAAACTAAACCTGCGAAGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGTCTGCAAACACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTAAAACAAAACGTAAAGAAAGTCTGCAAAGACATATATTGATCCATAAAAATCACTCAGAAATACAAATGTATCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAGAGAAAGCCTGCAAAGACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGTTTGAGACAAAACGTAAACTTAGCCTGCAAAGACATATGTTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATATTTGTGAGCATAAGACGAAACATAAACAAGACCTGCGAAAACATATGTTGACCCATAGAGACCACTCAAAAGTGTATCAGTGTGATATTTGTGAGTTTAAGACAAGACAAAAAGCAAACCTGCAAAGCCATATGTTGACCCATAAAGGCAGCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGAGTATAAGACGAAACTTAAACAAGACCTACGAAAACATATGTTGATCCATAAAGACCATTCAGAAATAGAAATGCATCAGCGTGATATTTGTGAGTTGAAGACAGAATGTAAAGAACACCTGCAAAGACATATGTTGACCCATACAGATCACTCAGGAATAGAAATGTGCCACTATGAATCTTGTGATTTTAAAACAGAACATAAATATAGCCTGGTTGAACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATATATGAGTGTGTTTCTTGTTCATATCAGACGAAATATGAAAGTTGCATGCAGGAGCACATACTAACCCACAAACTCCCCGCAGAAACAACGGACTAG
Protein Sequence
MLTHKLSTNTRMYQCDVCEFKTKRKHDLQSHILTHNDQSEIEMYQCDICEFETKRKHILQRHMLTHKDLSHIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCATCPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFRTKHKESLQRHMLTHKDQSEVDMYQCDICEFETKRKLSLQKHMLIHKDLSEVEMYQCDICELKTKHKISLKRHMLTHKDLPDIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFRTKHKESLQRHMLTHKDQSEVEMYQCDICEFETKCKLSLQKHMLIHKDHSEIEMYQCADCPFKTKYKRSLQGHMLTHKDLPEIEMYQCDICELKTKRKISLKRHMLTHKDLSDIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFKTKHKESLQRHMMTHKEQSEIKTYQCDICGLKTIRKLNLQRHMLTHKDLSEIEFYQCDSCEFKTKHKESLQTHMLTHKDQSEVEMYQCDICEFKTKRKESLQSHILIHKNHSEIQMYQCAACPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFKTKHRESLQRHMLTHKDQSEVEMYQCDICEFKTKRKESLQSHILIHKNHSEIQMYQCAACPFKTKYKRSLRGHMLTHKDLSEIEMYQCDICEFKTKHKESLQRHMLTHKDLSHIEMFHCDICGFKAKCKTYLQKHMLIHKGHSEIEMFQCTTCPFKTKYKHCLQGHMLTHKDLSEIELYQCDSCEFKTKHKESLQRHMMTHKNQSEIKTYQCDICGLKTIRKLNLRRHMLTHKDLSEIELYQCDSCEFKTKHKESLQTHMLTHKDQSEVEMYQCDICEFKTKRKESLQRHILIHKNHSEIQMYQCAACPFKTKYKQSLQGHMLTHKDLSEIELYQCDSCEFKTKHRESLQRHMLTHKDQSEVEMYQCDICEFETKRKLSLQRHMLTHKDQSEVEMYQCDICEHKTKHKQDLRKHMLTHRDHSKVYQCDICEFKTRQKANLQSHMLTHKGSSEIEMYQCDICEYKTKLKQDLRKHMLIHKDHSEIEMHQRDICELKTECKEHLQRHMLTHTDHSGIEMCHYESCDFKTEHKYSLVEHMLTHKDHSEIEIYECVSCSYQTKYESCMQEHILTHKLPAETTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01290580;
90% Identity
iTF_01290580;
80% Identity
iTF_01290580;