Rmor000519.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
Hr39
Assembly
GCA_963680705.1
Location
CAVMFP010000058.1:46407-53262[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.58 9.6e+03 -2.5 5.1 52 106 202 257 107 319 0.55
2 4 5.7e-09 9.4e-05 23.9 0.0 1 61 388 449 388 463 0.75
3 4 0.034 5.7e+02 1.5 0.0 73 118 434 480 409 517 0.64
4 4 5.4e-73 9e-69 234.7 0.2 205 408 519 717 503 717 0.97

Sequence Information

Coding Sequence
ATGGCCGCAGACATGAGGTCACCCAACGTATCTGTTACTCCAATAAACATGGAGCCCTATCCACCCCCTGTCCTCTCCAACGGGGACCATCGCCCACCTAGCGAGCCACCCCAGAGAACAAGAAGTGCACCCCATCCAGCAGCTTTAATTACGAATGgtACCTCCGACATTTTGGATAGTTCCGATGCAGAGGTAGCCAGAATAGACTTTCATGCAGTAAATATGAGATCGAAGAAAAAAAGGGATGACATACCGAGGCCTATGAGTTGGGAGGGCGAACTTTCGGACGGAGAAAGGGACGGTATGTGTGTGGATGAAGAGCACTTAGCACAGGTTCCAGAGAACCTCTCGTTGTCACAATCCAAGCCGTGCTCGCAAACGGATTTAAAAGAGAGCCCCATTTTGCGACTAAAGCAACCTCCCATGGGCAACTATTCCTTGCATAGCACACCTAGCAACTCACCATTACTTAGCCAACGTCACCCTGTTACAGGTGTGCCAATCATAAGCCATAAGGATCTCATGCACAAGGCTCTAAACGTCCCCCCTACCCCTAGCCCTGATTCTGCGATTCATTCAGCGTACAGTGTTTTTAGTTCACCGAATCAAAGCCCCTTGACTCAGAGACATATTACTTTAACCCCAAATTTGAGTAGGAATAATAGTGACGCGTCACATTCGAGCTGCTGTAGTTATAGTAGTGTCTCCGTTTCCGTGTCCCCTACTCAACAGTTCTCCCCTACGCACAGTCCTATACAGgGACGCCATATGCACAGTATTCATAGTAGCCCCTTACACCACAATATCCTTTATCGAAGCCTTCAGGAGGACCCCACCATACAGTACACCACCGAGCACGACACTCTCGACGAACCCGAGGACAAAGCAGGACTACTACATACATCACTACCTGCCCAACCGGGTATATCCAGGCAGCAACTTATCAACAGCCCATGCCCTATTTGCGGGGATAAAATATCTGGTTTCCATTATGGTATTTTCAGCTGTGAGTCATGTAAAGGCTTTTTCAAAAGGACTGTGCAAAATAGGAAAAACTACGTGTGTCTAAGAGGGGCTCAGTGTCCAGTGACGGTTGCTACTAGGAAGAAATGTCCAGCTTGCCGATTTGACAAGTGTCTTCAATGCGGAATGAAACTAGAAGCAATTAGAGAAGACAGAACACGTGGAGGTCGATCGACATATCAGTGTTCATATTCATTGCCTCCATCGTTGACCAATCATGCTGAACTAAGGGCCAGCTCGACTGATTTAAGGCAAGGGACGGGGGAAACGCATCCTGGACTTACCGTGAAACTAGAACCTCCGGAATCGGGAGTTTCGCATCACAAACGAAATACTTTACCGGGATCGAAAGGTGTCCCACCATTATTGCAAgaaataatGGATGTGGAGCACCTATGGCATTACAATGAAATGGAACTGAACAAGCTAAGTACAGAAGGCCACTTAGGTAAAGAAGGCTCAAGTGGGGCCGTGCACAACCTTTCTACACATCCGTTGCTGGCCGGTACAGCATTGGCAGGATCGACGGATACCAACCCTGACTTTGTAGCAACTCTTTGCAATATAGCAGATCATAGACTTTATAAGATAGTCAAGTGGTGCAAAAGTCTtcctttgtttaaaaatatatcgATTGACGATCAGATATGTTTGCTCATCAACTCGTGGTGCGAGCTTCTCTTATTTTCATGTTGTTTTCGGTCCATGTCCTCTCCAGGTGAAATAAGGGTATCACTTGGAAAAAGCATAAATCTGGCGCAAGCCAGAGAAATGGGCATGCAAGCATGTATAGAGAGAATGCTGAATTTCACGGAGCAGCTTAGGAGGCTTAGAGTGGATCAGTACGAATACATAGCTATGAAGGTCATCGTTCTTCTTACGTCAGATACTTCTGAACTTAGAGAAGCCGAAAAAGTCAGAGTCTCGCAAGAAAAagctttaaaagccctacaggATTATACTTTGTCACATTATCCCGAAAGTCCTGCCAAATTTGGGGAACTTCTCCTACGTATTCCTGAGTTACAACGAACTTGCCaggttGGAAAAGAGATGttaacaataaaatcaaaaGATGGCGACGGACCTAGCTTCAACCTCCTCATGGAGCTCCTAAGAGGGGACCACTGA
Protein Sequence
MAADMRSPNVSVTPINMEPYPPPVLSNGDHRPPSEPPQRTRSAPHPAALITNGTSDILDSSDAEVARIDFHAVNMRSKKKRDDIPRPMSWEGELSDGERDGMCVDEEHLAQVPENLSLSQSKPCSQTDLKESPILRLKQPPMGNYSLHSTPSNSPLLSQRHPVTGVPIISHKDLMHKALNVPPTPSPDSAIHSAYSVFSSPNQSPLTQRHITLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHMHSIHSSPLHHNILYRSLQEDPTIQYTTEHDTLDEPEDKAGLLHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHAELRASSTDLRQGTGETHPGLTVKLEPPESGVSHHKRNTLPGSKGVPPLLQEIMDVEHLWHYNEMELNKLSTEGHLGKEGSSGAVHNLSTHPLLAGTALAGSTDTNPDFVATLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSSPGEIRVSLGKSINLAQAREMGMQACIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELREAEKVRVSQEKALKALQDYTLSHYPESPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00753059;
90% Identity
iTF_01014531;
80% Identity
iTF_01290020;