Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: RREB1
Assembly: GCA_026260175.1
Location: JAKCWW010003955.1:27474-42691[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00012 0.012 16.7 0.7 1 23 142 164 142 164 0.96

2 15 4.8e-05 0.0048 18.0 1.3 1 23 179 201 179 201 0.98

3 15 1.1e-06 0.00011 23.1 1.6 1 23 207 229 207 229 0.99

4 15 0.00026 0.026 15.7 1.7 2 23 380 403 379 403 0.92

5 15 0.087 8.7 7.7 3.8 1 23 459 482 459 482 0.96

6 15 0.039 3.8 8.8 0.2 1 23 643 665 643 665 0.97

7 15 0.00038 0.038 15.2 0.5 1 23 673 695 673 695 0.99

8 15 0.0021 0.21 12.8 2.3 1 23 701 724 701 724 0.97

9 15 0.0012 0.12 13.6 2.1 1 23 1222 1245 1222 1245 0.95

10 15 0.00049 0.049 14.8 0.2 2 23 1566 1587 1565 1587 0.97

11 15 0.1 9.9 7.5 6.1 1 23 1593 1616 1593 1616 0.97

12 15 0.00017 0.017 16.2 2.6 1 23 1655 1679 1655 1679 0.98

13 15 0.9 90 4.5 0.4 1 23 1802 1825 1802 1825 0.95

14 15 0.013 1.3 10.4 0.7 2 23 1891 1912 1890 1912 0.96

15 15 0.011 1.1 10.6 5.9 1 23 1918 1940 1918 1940 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00012	0.012	16.7	0.7	1	23	142	164	142	164	0.96
2	15	4.8e-05	0.0048	18.0	1.3	1	23	179	201	179	201	0.98
3	15	1.1e-06	0.00011	23.1	1.6	1	23	207	229	207	229	0.99
4	15	0.00026	0.026	15.7	1.7	2	23	380	403	379	403	0.92
5	15	0.087	8.7	7.7	3.8	1	23	459	482	459	482	0.96
6	15	0.039	3.8	8.8	0.2	1	23	643	665	643	665	0.97
7	15	0.00038	0.038	15.2	0.5	1	23	673	695	673	695	0.99
8	15	0.0021	0.21	12.8	2.3	1	23	701	724	701	724	0.97
9	15	0.0012	0.12	13.6	2.1	1	23	1222	1245	1222	1245	0.95
10	15	0.00049	0.049	14.8	0.2	2	23	1566	1587	1565	1587	0.97
11	15	0.1	9.9	7.5	6.1	1	23	1593	1616	1593	1616	0.97
12	15	0.00017	0.017	16.2	2.6	1	23	1655	1679	1655	1679	0.98
13	15	0.9	90	4.5	0.4	1	23	1802	1825	1802	1825	0.95
14	15	0.013	1.3	10.4	0.7	2	23	1891	1912	1890	1912	0.96
15	15	0.011	1.1	10.6	5.9	1	23	1918	1940	1918	1940	0.98

Sequence Information

Coding Sequence: ATGCAAGATATGGCAACAATGCAACAACATTCCATCACATCTCCGGCTCCAGCATCAACAATACAAAATGAAGATTCTCCGGTGGATTCTATAACCGATGCAAATTTGGGTGCGGAGATTCACCACGAAGCTTCTCGAACCGATACCGAAAATTTCGAAGGCACTCGACGTACAACGAAAACAGCCAACGAAGAAGTGGGCGAAGACCGTGACTGCAATACAACGAATGAAGACACGCATAGCAATAATAATTCTAAAGGCCAAAGCAACGAAGACTGTTGCTCAGACTCTAACGACGTTACAAAAAGCGATGAATCTCGGGAGAACAGTGAAGTGAATTCAGACTCCAGGACTCGAACGTTAAGCGATGATGATCCAGATGCCGAAGAGTGCAGTGCTGAGGGCAGGGACGTGCAGATGAAGTACTTGTGTCCGATCTGCGACACGGTGCTTAGCTCTCAGCATGACTTCACGCTTCACATCCGCTCACACAACAACGACGGCGAGAATCTTGCCGTCGATTGCCTGAAGACCTTCACTTGCAAGATCTGCCATAAAGTACTGAGCTCCTCTAGCTCACTGGACCGCCATGTCCTCGTGCACTCTGGGGAGCGACCTTTCAAATGTTTGATTTGTGGAGTCGCCTTCACCACGAACGGCAACATGCATCGCCACATGAGGACTCACAGCAGCCCAGCCTCCAAGTCAGAGAGCTCTAACAACTACGAGAGTGATGGCAGCACCGACAGCAGCGCATCTTTCAACAGCAAGAAGAGTCCCCTTTCATCTCCACAACCTGGTAACAACAATGCCAAAAAAAGACGAGTCGGCAACCACACAACATCGCCAACAGAAACACATTCCTCAGGTTCTTCTTCATCAGGGTCATATCAGTCACCAAATGGCAGAGAAAATTTGAATAAAAGGAAATTGCCCGAATTGTTTCCTTCAGATTCCGCAGAAAGCAATGAAAGTACAAGCAGAAGGAGGATTAAGGCTGTACCAAATAGTCTTCATGGTAAACACGAATGTTCACCTGAGCAAAGTCTTCAGTGCCCTGTGTGTGACAGAGAGGACTTTGTGTCGTTGAATATTCTAGAGACACACATGGAAGAAAGCCATCCAGAATACCACATCCGCTGTCATGTTTGTGACCTGACATTCAAGAACAACCGGGCACTTAAGCTTCACCGTCAGACAGCTCAGCACGAAAACATTAGCAAGGGAACGAAAAGCAATTCACAACAACAGCATAATACTACTGTGCTTGGTTTCAATGACCTAACGTTTGTAGATTTTTCCAGTCAAAAATTCCCCCACATCGCTGTTGCTGTGTGCGAGAAGAGTCTGCACAAGCCATCCAGTGCCATCAAGTTTCAATGCAATAAGTGTGGTCATGCATTTCCTTGTGCCACTGCCTTGCACATCCACCAGAGGGACAGCCATGGTGACCTCTCGAGTAACAGTGACGCCCCCACTGATCTCAGGAGCAACAGAAAGAAAACACCTGTGGCTGGGAGAAGCTCTGAATCAGAAGAAGAGATTGAAGAACGCAAGCGTGAGGACTTCTTTGCAGGTCTGGATTTGCAGAACAAATCAATTCCTTCATCACCATCAGGCTCTTTTGAGCACAATCCTTCCAAGAAGGAAGAAGTGTTTGAGCCTTCAGTGTACAACAGTCCACTGAATGGGGAAAGGAATGAGACAGGGGACAGGAGTGGAGAGAGTGGGAAAGACTTGGCAGATATCCAGAGTATTATATCTGTGACGTCTGCTGGAGGATTGTTACAAGATCTGTCTAAATCACCTCCTCAAGTAGGTGTGCTCACTTCTGATTGTGGGGCTCGACTTGATGCGGTAACTGGCGAGGACGAACAGCAAGACTGCTTTGCAGCTGAATTTAGACGTATGAAGTTGAAGGGAGAATTTCCTTGTAGACTATGCACAGCTGTTTTTCCAAATCTGAGGGCTCTTAAGGGTCACAACCGGTCACATCTCTCATCAAGTGTTGGAATATTTCGCTGCAACATGTGTCCATACACAAACCCTGACAAGGCAACTTTAGTCCGTCACATGAGAACCCACAATGGAGATCGTCCCTATGAATGTGCTCTATGTAACTATGCATTTACTACAAAAGCAAACTGTGAGAGGCATCTGAGGAACAGACATTCCAAACTATCAAGAGAAGATGTAAAGAAGTCGATCATCTATCATCCATCTGAAGACCCAACTAATGATCCTGAACTTCAAGCAAAATTGCAGGCTCGTGAGGATGTGAAAAGGTCTTTGGTTTTTAACACTCAGCACTCTTCTTCCCAGGAAGATTTGAACACTACTGAACATTCCTCACATTATCAGCATTCCTTGAGTGAACACAAACGGAGTTACTCCCCAGATGAGAAATTGGTAACATTACAGCAGTATGAAGAATTCAAACATGAACCTAGACAAACCCAGTCACCACACCAAAACATTACAGAGCAGCATTTGACAGGTAAAAAACAGGTTAGTGTGTGGGAGAAGACCCAAGAAGCTGCAACAATGACAAATTGTGTGCGGGAAGTAGAAGATGAAGAGAGAAGTTGTGATGGTGATTTGGAAAAGGAAAGAGAAAGCATTGATAAAATATCAAGCATTGAAGCCCTAGTCAGTTTAACCAAAAATAACATTAATGCTTTTCCTAAACTACCTGTAAGTGAGAACCAAAGATTTTCAAACAAAGAAATCATGAAAGTGGCACCATTACGGCATTTGGTAGGTACCTGTCCATCACCAGAAAGAGATGTGGATTCACCTCTGGATCTCAGTATGGATGCACTAGATTTGAGTAAAAGAAGAGAGCCTTACAACAAGAGCTTCTCAGCAACTCCTACCAAAGAATCAGATGATGCAGAACCTCAGGACTTATCCAAAAAATCTAGAAGCAGTGAGTTCGCCAACAAGAAGAGATCTCCTTCCACAGTTTTTTCATCCAAGTTAGAACATAGCTTGAGAAATGATAGCACAGGCAGCCACCAGCATGGCTCCTTGGCTCAGCAGAGACTTACATCTAGCAAGGGCACTGCCATGTCATCTCATGAGAATAGCCCAAGTCCCAGCGCATTACCAAAACTGGATTTGAACGCAGCAGGATTCTATGGAAATTCACAGCTAAACCACCTGTACTTAAACAGCAACGGCTTCCCATTCCATCAGGCACAGGCTCCTTTTCCTTTGCACTCTTACTTCATGCCACATGCTCCTGCGCTGCTGCAGAGTCCTAATATGGAGGAGTTTAGATCACGTCTACACAAGGAGTTGATCAACAATTTGCAACTCTCTGGTGGCACAATTTTTGACTCCATGATGGTTTCAACAGCCGAAAGGCTTCAAGCAATTCACAATCAAGCATTTCCAGATTATTCTAGAGGGAAGCCTGATGTAACAATGGGTTATGGTGATTTTAAAGCTGAAGAAACAAGACAGCCACAAGTGATGCCAGCTAAAGATTTTGACAAGTCTGCCTCAAGCAGTGGCATTAGTAAAACATCTCCTGTTGCGAAGGTCTCTGTGACACCAAAGTCAGCTAGGGAACGGGATAACTCTTCTGTAAAGATGGTCATTAAGAACGGGGTCCTGATGCCTAAACAGAAACAGAGAAGATACAGAACAGAGCGTCCGTTTGCTTGTGAACATTGCTCAGCACGTTTCACACTACGTTCAAACATGGAACGTCACATTAAACAGCAACACCCTCAGTACTGGACACAAAGGCAGAGGAACAATTTAGGAACTTCTGGTCCTGGAAGGAGAAGTCACTCTAGCCTGACGACGAACCTTAACATCGCCAATCATCAGGAAGTGTCGGACGCTGACAATGTTAGCACTCAGACCAAGAATAACATGTTGACTCAGCATATACCTGCAGTCATTAATGTTCCAGAATCGTCAAACAAGTACCAGATCTCTCATTTAATTCGGGATAACGTTCATCCAAACAGAGAAGAAGATGCGCCGCATCCGATAGTAGTACCAAAGATAAAAGAAGAGATTACCACTGACTCAGGATTGTTGGAAATTGTCCATAAAACCAAAGATAATTCTAGTATACTAATAATAAATAATAATAATAATAACAATAACTATAATAATTATAGTAAGACATTTATATCAGAGGAAGTTAAACTTGCTATAGCTCAACAGTTGAAATCAAAACTGAACAACGCTGTGCCTACAGTGAGTGGAAATGAGACGACTGAGAGAAGTCAAGAGGAGATTAAGAAAGACATGGATGAGGATAATGATGACGAAAGTGAATTAGTGATAGATGAGGGGAAGGATGTTGAAGAAGAAGCTATGGAGAAAAAGCAATCAAAAGAGGAAACCAAAGATAAGTTCAGTGAAGCCAACATTAGAGTGGGAGTGTCCAGCAGTGCGAAGGACGTGGACCTTGCGAGTGTATCACGGCTCTTGGACAATGCAACAACTCACACACAAGCCTTCCAGCGCTACTTTCGGGGCACTCACGATGGAGAGGATGCTCTGGAGGGGAGTGAAGAGGATGAAGAAGGGCTTGTTGCAGGCAGCAATAGTGAAGGCAACAATTCAGGGAGTGATGAAAACAAGTCAGAGTGTGAGCTGGGCAACACCAACACCAGCACCAGTGGTGTAGAGAAGAAGAAAAGTGCGTATTCATTAGCACCAAACCGTGTCTCATGTCCTTACTGCCCACGAACATTCCCTTGGACTTCATCTCTGAGGCGCCACGTGCTGACTCATACTGGACAGAAGCCTTACAAATGTCCACACTGCTCACTGCTCTTCACTACCAAGTCAAACTGCGACCGCCATCTGCTCCGCAAACATGGCAGCCAATCGGCCTCATCGGCACCTCAAGGCGGAAATTCTTCATCAAGCTCTGAGACTTCACCCGGCTCTAATTCAGGAAACTACACCATGAGGAACGTTCCAGAGAGGCCGTACAAGTGCAACTACTGTCCGAGCTCAACATTCTCAACACAGAGCAACCTCAAGAAGCATGTGCAGACAAAGCACAGCCCAGTCAGTCCTGGACCTGCAGCGCAGCCACTCGTACCGAGGACTGTTACGTCTGCAGAAGAGGGTTGGAACGCAAGTACTGCAGGCAGCAGTCATCCTGAGAGCCGGTATGGCGGAGATGAGAGTCATGGTAGTGGCAGTGATGATGCTGGTGATGACAGGGGGACTGCCCAATGGGAAGGCAGTGTGAAGCAGAAAGACCTTGATGATCACGGTGTCAATAACCTGTCATCATCTACTGCAGATTGCCAGAAGAGCCAGCTGTTGAGCAATAATGCGACAGAAGGGCCGAAAGTCTACACGTCTGCACCGGAGCCTCACACAGGTGGCGCTACTGCTGTGGTGTCATCAGCAGACTTACCATTCAAGTGTCACCTGTGTGAGGGCAGCTATGCAGAGCGTCAGGAGGCCCTTGAGCACATCCGTGAGAGCCACCCATCAGAGTTTGAGCTCCTAATGTCAAAGGGAGCTCTTGACTCCAGCTGCAGTACAGGAACTGAGGACAACAACAACGTGAGCAGCAGCAGCGGTAACAGTGTGGCACCGCACCCTGATGACGGTAATGCTGGAGGAGATGAGAGCTTGGAGCAGCTGCGTGGGAAGTTTCCAGACTATGCCAACAGAAAGGTGAAGTGTGCATTCTGCATGCGGCGGTTCTGGTCTGCGGAGGACTTGCGACGTCACATGCGAACCCACACAGGAGAACGTCCTTTCTCATGCGACATCTGCCGACGACGCTTTACACTTAAACACAGTATGCTGCGACATCGAAAAAAACACAATAACTCTACTGCCCTCTACAACTCTTCAGCAACTTCCACTGAGGATGTTTCTGTGGTCAGTGGAGATGAGGACCACCCTAGCAGCGGTACCGCACTTCACAGCATGCTACATCATCATACTAAGAAGCAACCCTCAGGAGAAGATGCAGCTGGAATTAGTGGAGACGAGGAAGTTGGCCCATCCTTATCAGGTTCTGTTGATGGTAAACCCCTCAAGATGACCAACCATAATAATAATAACATAACCACCACATCTGCTAATAAAAGCATGAAGCAGTGGGATAAAGATTCTGAAAATTTCACAGCTTCTACTGCAGCAAAGATTCTAAGCTCAAAGTTTTCATTGTGTACAATGGGAACAGCAGACAGGAGGGATGATGTAGAAGACGATAACACAGACCTAATCGGAAACCTGCTTGGGATTCAGGGATCAATAATTGATAAGGTCCTGCAGTCAAAGTCTGCTGCTGACGAGGCTGCTAGGCTGTTCGGCGTTCAAAATGGAGAGAATCAGGAATGA
Protein Sequence: MQDMATMQQHSITSPAPASTIQNEDSPVDSITDANLGAEIHHEASRTDTENFEGTRRTTKTANEEVGEDRDCNTTNEDTHSNNNSKGQSNEDCCSDSNDVTKSDESRENSEVNSDSRTRTLSDDDPDAEECSAEGRDVQMKYLCPICDTVLSSQHDFTLHIRSHNNDGENLAVDCLKTFTCKICHKVLSSSSSLDRHVLVHSGERPFKCLICGVAFTTNGNMHRHMRTHSSPASKSESSNNYESDGSTDSSASFNSKKSPLSSPQPGNNNAKKRRVGNHTTSPTETHSSGSSSSGSYQSPNGRENLNKRKLPELFPSDSAESNESTSRRRIKAVPNSLHGKHECSPEQSLQCPVCDREDFVSLNILETHMEESHPEYHIRCHVCDLTFKNNRALKLHRQTAQHENISKGTKSNSQQQHNTTVLGFNDLTFVDFSSQKFPHIAVAVCEKSLHKPSSAIKFQCNKCGHAFPCATALHIHQRDSHGDLSSNSDAPTDLRSNRKKTPVAGRSSESEEEIEERKREDFFAGLDLQNKSIPSSPSGSFEHNPSKKEEVFEPSVYNSPLNGERNETGDRSGESGKDLADIQSIISVTSAGGLLQDLSKSPPQVGVLTSDCGARLDAVTGEDEQQDCFAAEFRRMKLKGEFPCRLCTAVFPNLRALKGHNRSHLSSSVGIFRCNMCPYTNPDKATLVRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHSKLSREDVKKSIIYHPSEDPTNDPELQAKLQAREDVKRSLVFNTQHSSSQEDLNTTEHSSHYQHSLSEHKRSYSPDEKLVTLQQYEEFKHEPRQTQSPHQNITEQHLTGKKQVSVWEKTQEAATMTNCVREVEDEERSCDGDLEKERESIDKISSIEALVSLTKNNINAFPKLPVSENQRFSNKEIMKVAPLRHLVGTCPSPERDVDSPLDLSMDALDLSKRREPYNKSFSATPTKESDDAEPQDLSKKSRSSEFANKKRSPSTVFSSKLEHSLRNDSTGSHQHGSLAQQRLTSSKGTAMSSHENSPSPSALPKLDLNAAGFYGNSQLNHLYLNSNGFPFHQAQAPFPLHSYFMPHAPALLQSPNMEEFRSRLHKELINNLQLSGGTIFDSMMVSTAERLQAIHNQAFPDYSRGKPDVTMGYGDFKAEETRQPQVMPAKDFDKSASSSGISKTSPVAKVSVTPKSARERDNSSVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWTQRQRNNLGTSGPGRRSHSSLTTNLNIANHQEVSDADNVSTQTKNNMLTQHIPAVINVPESSNKYQISHLIRDNVHPNREEDAPHPIVVPKIKEEITTDSGLLEIVHKTKDNSSILIINNNNNNNNYNNYSKTFISEEVKLAIAQQLKSKLNNAVPTVSGNETTERSQEEIKKDMDEDNDDESELVIDEGKDVEEEAMEKKQSKEETKDKFSEANIRVGVSSSAKDVDLASVSRLLDNATTHTQAFQRYFRGTHDGEDALEGSEEDEEGLVAGSNSEGNNSGSDENKSECELGNTNTSTSGVEKKKSAYSLAPNRVSCPYCPRTFPWTSSLRRHVLTHTGQKPYKCPHCSLLFTTKSNCDRHLLRKHGSQSASSAPQGGNSSSSSETSPGSNSGNYTMRNVPERPYKCNYCPSSTFSTQSNLKKHVQTKHSPVSPGPAAQPLVPRTVTSAEEGWNASTAGSSHPESRYGGDESHGSGSDDAGDDRGTAQWEGSVKQKDLDDHGVNNLSSSTADCQKSQLLSNNATEGPKVYTSAPEPHTGGATAVVSSADLPFKCHLCEGSYAERQEALEHIRESHPSEFELLMSKGALDSSCSTGTEDNNNVSSSSGNSVAPHPDDGNAGGDESLEQLRGKFPDYANRKVKCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNNSTALYNSSATSTEDVSVVSGDEDHPSSGTALHSMLHHHTKKQPSGEDAAGISGDEEVGPSLSGSVDGKPLKMTNHNNNNITTTSANKSMKQWDKDSENFTASTAAKILSSKFSLCTMGTADRRDDVEDDNTDLIGNLLGIQGSIIDKVLQSKSAADEAARLFGVQNGENQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370472;
90% Identity: iTF_00370472;
80% Identity: -