Basic Information

Insect: Coptotermes formosanus
Gene Symbol: RREB1
Assembly: GCA_013340265.1
Location: BLKM01000871.1:10707-24685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0001 0.005 16.7 0.7 1 23 145 167 145 167 0.96

2 16 4.2e-05 0.002 18.0 1.3 1 23 182 204 182 204 0.98

3 16 9.7e-07 4.7e-05 23.1 1.6 1 23 210 232 210 232 0.99

4 16 9.5 4.6e+02 1.1 0.1 2 21 354 374 353 377 0.69

5 16 0.00012 0.006 16.5 1.7 2 23 383 406 382 406 0.92

6 16 0.41 20 5.4 3.5 1 23 462 485 462 485 0.90

7 16 0.034 1.6 8.8 0.2 1 23 653 675 653 675 0.97

8 16 0.00033 0.016 15.1 0.5 1 23 683 705 683 705 0.99

9 16 0.0018 0.087 12.8 2.3 1 23 711 734 711 734 0.97

10 16 0.001 0.05 13.6 2.1 1 23 1235 1258 1235 1258 0.95

11 16 0.00042 0.02 14.8 0.2 2 23 1577 1598 1576 1598 0.97

12 16 0.087 4.2 7.5 6.1 1 23 1604 1627 1604 1627 0.97

13 16 0.00015 0.0072 16.2 2.6 1 23 1666 1690 1666 1690 0.98

14 16 0.78 38 4.5 0.4 1 23 1813 1836 1813 1836 0.95

15 16 0.011 0.53 10.4 0.7 2 23 1902 1923 1901 1923 0.96

16 16 0.0095 0.46 10.6 5.9 1 23 1929 1951 1929 1951 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0001	0.005	16.7	0.7	1	23	145	167	145	167	0.96
2	16	4.2e-05	0.002	18.0	1.3	1	23	182	204	182	204	0.98
3	16	9.7e-07	4.7e-05	23.1	1.6	1	23	210	232	210	232	0.99
4	16	9.5	4.6e+02	1.1	0.1	2	21	354	374	353	377	0.69
5	16	0.00012	0.006	16.5	1.7	2	23	383	406	382	406	0.92
6	16	0.41	20	5.4	3.5	1	23	462	485	462	485	0.90
7	16	0.034	1.6	8.8	0.2	1	23	653	675	653	675	0.97
8	16	0.00033	0.016	15.1	0.5	1	23	683	705	683	705	0.99
9	16	0.0018	0.087	12.8	2.3	1	23	711	734	711	734	0.97
10	16	0.001	0.05	13.6	2.1	1	23	1235	1258	1235	1258	0.95
11	16	0.00042	0.02	14.8	0.2	2	23	1577	1598	1576	1598	0.97
12	16	0.087	4.2	7.5	6.1	1	23	1604	1627	1604	1627	0.97
13	16	0.00015	0.0072	16.2	2.6	1	23	1666	1690	1666	1690	0.98
14	16	0.78	38	4.5	0.4	1	23	1813	1836	1813	1836	0.95
15	16	0.011	0.53	10.4	0.7	2	23	1902	1923	1901	1923	0.96
16	16	0.0095	0.46	10.6	5.9	1	23	1929	1951	1929	1951	0.98

Sequence Information

Coding Sequence: ATGCAAGATATGGCAACAATGCAACAACATTCCATCACATCTCCGGCTCCAGCATCAACAATACAAAACGAAGATTCTCCTGTGGATTCGATAACCGATGCAAATTTGGGTGCCGAGATTCACCACGAACCTTCTCGAACCGATAGCGAAACTTTCGAAGGCACTCGACATACAACGAAAACAGCCAACGAAGAAGTGGGCGAAGACCGTGACTGCAGTACAACGAATGAAGATATGTGTAGCAATAACAATTCTAAAAGCCAAAGCAACGAACGCAACGAAACCGGTTGCTCAGACTGTAACGACATTACAAAAAGCGATGAATCTCGGGAGAACAGTGAAGTGAATTCAGACTCCAGGACTCGAACGTTAAGCGATGACGATCCAGATGCCGAAGAGTGCGGCGCCGAGGGCAGAGACTTGGAGATCAAATACTTGTGTCCGATCTGCGACACGGTGCTTAGCTCCCAGCATGACTTCACGCTTCACATCCGCTCACACAACAACGACGGCGAGAATCTTGCCGTCGATTGCCTGAAGACCTTCACTTGCAAGATCTGTCATAAGGTACTGAGCTCCTCTAGCTCACTGGACCGCCATGTCCTCGTGCACTCTGGGGAGCGACCTTTCAAATGTTTGATTTGTGGAGTCGCCTTCACCACGAACGGTAACATGCATCGCCACATGAGGACCCACAGCAGCCCGGCTTCCAAGTCAGAGAGCTCTAATAACTACGAGAGCGATGGCAGCACTGACAGCAGCGCTTCTTTCAACAGCAAGAAGAGTCCCCTTTCATCTCCTCAACCTGGTAACAGCAATGCCAAAAAAAGGCGAGTTGGCAACCATACACCATCGCCCACAGAAACACAGTCCTCAGGTTCTTCTTCATCAGGGTCGTATCAGTCACCAAATGGCaatgaaaatttgaataaaaggAAATTGCCCGAATTGTTTCCTTCAGATGCCACAGAAAGCAATGAATCTACAAGCAGAAGAAGGATTAAGGCTGTACCAAACAGTCATCATGATAAACACGAATGTTCACCTGAGCAAAGTCTTCAGTGCcctgtgtgtgacagagaggACTTTGTGTCACTGAATATTCTAGAGACACACATGGAAGAAAGCCATCCTGAGTACCAGATCCGCTGTCATATTTGTGACCTCACATTCAAGAACAACCGGGCACTTAAACTTCACCGTCAGACAGCTCAGCATGAAAATTTTAGCAAGGGAACGAAAAGTAATTCACAACAACAGCATAATACTACTGTGCTTGGTTTCAATGACCTAACGTTTGTAGATTTCTCCAGCAAAAAGTTCCCCCACATAGCTGTTGCTGTGTGTGAGAAAAGTCTGCACAAACCATCCAGTCCCATCAAGTTTCAATGCAATAAGTGTGGTCATGCGTTCCCTTGTGCCACTGCTTTGCACATCCACCAGACGGACAGCCATGTTCGGTGCAGCGAATATCAGGGTGATCCCTCAAGCAACAGTGACACCGCCACTGATCTGAGGAGCAACCGAAGGAAAACACCTGTGGCTGTGAGAAGCTCTGAATCAGAAGAAGAGATTGAAGAACGCAAGCGTGATGACTTCTTTGCAGGTCTTGATTTACAGAACAAATCAACTCCTTCATCACCATCAGGCTGTCTTCAGCATAATCATTCCAAGAAAGAAGACGTGTTTGACACTTCAGTGTACAACAGTCCACTGAATGTGGAAAGGAAAGAGACAGGGGACAGGAGTGGAGAGAGTGGGAAAGACTTGGCAGATATCCAGAGTATTATATCTGTGACGTCTGCTGGAGGATTGCTACAAGATCTGTCTAAATCACCTCCTCAGGTAGGCACGCTTACTTCTGATTGTGGGGTTCGACTTGATGCGGTAACTGGTGAGGAAGAACAGCAAGACTGCTTCGCAGCTGAATTTAGACGCATGAAGCTGAAGGGAGAATTTCCTTGTAGACTATGTACAGCTGTTTTCCCAAATCTGAGAGCTCTTAAGGGTCACAACCGGTCACATCTCTCATCAAGTGTTGGAATATTTCGCTGCAACATGTGTCCATACACAAACCCTGACAAAGCAACTTTAGTCCGTCACATGAGAACCCACAATGGGGATCGTCCCTATGAATGTGCTCTATGTAATTATGCATTTACAACAAAAGCAAACTGTGAGAGGCATCTCAGGAACAGACATTCCAAATTATCAAGAGAAGATGTCAAGAAATCAATTATCTATCATCCATCTGAAGACCCAACTAATGATCCTGATCTTCAAGCAAAAGTGCAGGCTCGTGAGGATGTGAAAAGGTCTTTGGTTTTTAACAATCAGCACTCTTCTTCCCTGGATGATTTGAACGCTACTGAACATTCCTCGTGTTATCAGCATTCCTTGAGCGAACACAAAAGGAGTTACTCCCCAGATGAGAAATTGGTAACATTACAGCAGTATGAAGAATTCAGACATGAATCTAGACAAACCCAGTCACCACACCTTAACATTACAGAGCAGCATTTGGCAGGTAAAAAACAGGCTAGTGTATGGGAGAAAACTCAAGAAGCTGCAACAATGACAAATTGTGTGAGGGAAGGAAACGATGGAGAAGATGAAGATACAAGTCATGATGGTGATTTGGATAAGGAAGGAGAAAGCATTGACAGAATATCAAGCATTGAAGCCCTAGTCAGTTTAACCAAAAATAACACTAATACATTTCCTAAGCTACCTGCAAGTGAAAACCAAagattttcaaacaaagaaatgatAAAAGTTGCACCATTACGGCATTTAGTAGGTACCTTTCCATCACCAGAAAGAGATGTAGATTCACCTCTAGATCTCAGTATGGATGCACTGGATTTGAGTAAAAGAAGAGAGCCTTACAGCAAAAGCTTCTCAGCAACTCCTACCAAAGAATCAGATGATGCTGAACCTCAGGACTTATCCAAAAAATCTCGAAGCAGTGAGTTCATCAACAAGAGGAGATCTCCTTCCACAGTTTTTTCACCCAAGTTAGAACACAGCTTAAGGAATGAAAGCATAGGCAGTCACCAGCATGGCTCCTTGGTTCAGCAGAGGCTTACATCTAACAAGGGCACTGCCATGTCATCTCATGAGAATAGCCCAAGTCCCACTACTCTACCAAAACTGGATTTGAACGCCGCAGGATTCTATGGAAATCAACAGCTAAACCACCTGTACTTAAATAGTAACGGCTTCCCATTCCATCAGGCACAGGCTCCATTTGCTTTGCACTCTTACTTCATGCCTCCTGCTCCTGCACTGCTGCAGAGTTCCAATATGGAGGAGTTGAGGTCACGTCTACACAAGGAGTTGATCAACAATTTGCAACTGTCTGGTGGAACAATTTTTGACCCCATGATGGTTTCAACCGCTGAAAGGCTTCAAGCGATTCACAGTCAAGCATTTACAGATTATTCAAGAGGAAAACCTGATGTAACAATGGGTTATGGTAATTTTAAAGCTGAAGAAACAAGACAGCCACAAGTGATGCCAGCAAAAGATTTCGACAAGTCTGCCTCAAGCAGTGGCATTAGTAAGACACCCGCTGTTGTGAAGGTCTCTGTGACACCAAAGTCAGCTAGGGAGCGGGATAACTCTTCTGTAAAGATGGTAATTAAGAATGGGGTCCTGATGCCTAAACAGAAGCAGAGAAGGTACAGAACAGAGCGTCCATTTGCTTGCGAACATTGCTCAGCACGTTTCACCCTGCGATCAAACATGGAACGTCACATTAAACAGCAGCACCCTCAGTACTGGACACAAAGGCAGAGGAACAATGTAGGAACTTCTGGTCCTGGAAGGAGAAGTCACTGTAGCCTGACTGCGAACCTTAACATTGCCAATCATCAGGGAGTGTCAGACACTGATAATGTTAGCACTCAGTCCAAGAATAACATGTTGACTCAGCATATACCTGCAGTCATTAATGTTGCAGAATCATCAAACAACTACCAGATCTCTCATTTAATTCAGGATAATGTTCATCCAAACAAAGAAGAAGATGTGCAGCATCCGATAGTAGTACCAAAGATAAAGGAAGAGATTACCACTGACTCAGGATTGTTTGAAATTGTCCACAAAACCAAAGATAATtctagtataataataataaataataataacaataacaataataattatagtaaaacatttatatcagaGGAAGTTAAACTTGCTATAGCTCAACAGTTGAAATCAAAATTGAATAACCCTGTACCTACAGTGAGTGGAAATGAGACAACTGGGAGAAGTCAAGAGGAGATTAAGAAAGATGTTGATGAGGATAATGATGACGAAAGTGAATTAGTGATAGACGAGGGAAAGGATGTTGAAGAAGATGCTATGGAGAAAAAGCAATCAAAAGAGGAAACCAAAGATAAGTTCAGTGAAGGCAACATTAGAGTGGGAGTGAGCAGCAGTGCGAAGGATGTGGACCTTGCGAGTGTATCGCGGCTCTTGGACAATGCAACAACTCACACACAAGCCTTCCAGCGTTACTTTCGGGGCACTCACGATGGAGAGGATGCCCTTGAGGGGAGTGAAGAGGATGAAGAAGGGCTTGTTGCAGGCAGCAATAGTGAAGGCAACAATTCAGGAAGTGATGAAAACAAGTCAGAGTGTGAGCTGGGCAACACCAACACCAGTACCACTGGTgttgagaagaagaaaagtgcGTATTCCTTAGCGCCAAACCGCGTGTCGTGTCCTTACTGCCCGCGGACATTTCCTTGGACTTCATCTCTACGGCGCCACGTGCTGACTCATACTGGACAGAAGCCTTACAAATGTCCACACTGCTCACTGCTCTTCACTACCAAGTCGAACTGCGACCGCCATCTGCTCCGCAAACACGGCAGCCAATCGGCCTCATCAGCGTCTCAAGGTGGAAGTTCTTCATCAAGCTCTGAGACTTCTCCTGGCTCTAATTCAGGGAACTACACCATGAGGAATGTTCCAGAGAGGCCGTACAAGTGCAACTACTGTCCGAGCTCAACTTTCTCAACACAGAGCAACCTCAAGAAGCATGTGCAGACAAAGCACAGCCCAGTCAGTCCTGGACCTGCACTGCAGCCGCTCATACCAAGGACTGTTATGTCTGCAGAAGAGGGTTGGAATGCAAGTACCGCAGGCAGCAGTCGTCCTGACAGCCGGTATGGGGGAGACGAGAGTCATGGTAGTGGCAGTGATGATGCTGGTGATGACAGGGGAACTGCCCAATGGGAAGGCAGCGTGAAGCAGCAGGAACTTGATGATCGCAGTGTCAATAACTTGTCATCATCTGCTGCAGATTGCCAGAGGAGCCAGCTGTTGAGCAACAATGCAGCGGAAGGGCCAAAAGTCTACACGTCTGCACTGGAGACTCACACAGGTGGCACTACTGCTGTAGTGTCATCAGCAGACCTACCGTTCAAGTGTCACCTGTGTGAGGGCAGCTATGCAGAGCGGCAGGAGGCCCTTGAGCACATCCGTGAGAGCCACCCATCAGAGTTTGAGCTCCTAATGTCAAAGGGAGCTCTTGACTCCAGCTGCAGTACAGGAACTGAGGACAACAACAACGtgagcagcagtagcagcagcagtgtggCACcacaccctgatgatggtaatgcAGGAGGAGAAGAGGGCTTGGAGCAGCTGCGTGGGAAGTTCCCAGACTATGCCAACAGAAAAGTGAAGTGTGCATTCTGCATGCGGCGGTTCTGGTCTGCAGAGGACTTGCGGCGTCACATGCGAACCCATACAGGAGAACGTCCCTTCTCATGTGACATCTGTCGACGACGCTTTACACTTAAACACAGCATGCTGCGACATCGCAAAAAGCACAGTAACTCCACTGCCCTCTACAACTCTTCAGCAACTTCCACTGAGGATGTCTCTGTGGTCAGTGGAGATGAGGACCATCCCAGCAGTGGTACAGCACTTCACAGCATGCTACATCATCATACCAAGAAACAGCACACAGGGGAAGATGCAGCTAGAATTAGTGCAGACGAGGAAGTTGGCGCATCCTTATCAGGTCCTGTTGATGGTAAACCCCTCAAAATGACAAaccataataacaacaacataacCACCACATCTGCTAATAAAAGTATAAAGCAATGGGATAATGATTCTGAAAATTTCACAGCTTCTGCTGCAGCAAAGATTCTAAGCTCAAAGTTTTCATTATGTACAATGGGTACGCCAGACAGGAGGGATGATGCAGAAGATGATAACACAGACCTAATTGGAAACCTGCTTGGGATTCAGGGATCAATAATTGATAAGGTTCTGCAGTCAAAGTCTGCTGCTGATGAGGCTGCTAGGCTGTTCGGCGTTCAAAATGGAGAGAATCAGGAATGA
Protein Sequence: MQDMATMQQHSITSPAPASTIQNEDSPVDSITDANLGAEIHHEPSRTDSETFEGTRHTTKTANEEVGEDRDCSTTNEDMCSNNNSKSQSNERNETGCSDCNDITKSDESRENSEVNSDSRTRTLSDDDPDAEECGAEGRDLEIKYLCPICDTVLSSQHDFTLHIRSHNNDGENLAVDCLKTFTCKICHKVLSSSSSLDRHVLVHSGERPFKCLICGVAFTTNGNMHRHMRTHSSPASKSESSNNYESDGSTDSSASFNSKKSPLSSPQPGNSNAKKRRVGNHTPSPTETQSSGSSSSGSYQSPNGNENLNKRKLPELFPSDATESNESTSRRRIKAVPNSHHDKHECSPEQSLQCPVCDREDFVSLNILETHMEESHPEYQIRCHICDLTFKNNRALKLHRQTAQHENFSKGTKSNSQQQHNTTVLGFNDLTFVDFSSKKFPHIAVAVCEKSLHKPSSPIKFQCNKCGHAFPCATALHIHQTDSHVRCSEYQGDPSSNSDTATDLRSNRRKTPVAVRSSESEEEIEERKRDDFFAGLDLQNKSTPSSPSGCLQHNHSKKEDVFDTSVYNSPLNVERKETGDRSGESGKDLADIQSIISVTSAGGLLQDLSKSPPQVGTLTSDCGVRLDAVTGEEEQQDCFAAEFRRMKLKGEFPCRLCTAVFPNLRALKGHNRSHLSSSVGIFRCNMCPYTNPDKATLVRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHSKLSREDVKKSIIYHPSEDPTNDPDLQAKVQAREDVKRSLVFNNQHSSSLDDLNATEHSSCYQHSLSEHKRSYSPDEKLVTLQQYEEFRHESRQTQSPHLNITEQHLAGKKQASVWEKTQEAATMTNCVREGNDGEDEDTSHDGDLDKEGESIDRISSIEALVSLTKNNTNTFPKLPASENQRFSNKEMIKVAPLRHLVGTFPSPERDVDSPLDLSMDALDLSKRREPYSKSFSATPTKESDDAEPQDLSKKSRSSEFINKRRSPSTVFSPKLEHSLRNESIGSHQHGSLVQQRLTSNKGTAMSSHENSPSPTTLPKLDLNAAGFYGNQQLNHLYLNSNGFPFHQAQAPFALHSYFMPPAPALLQSSNMEELRSRLHKELINNLQLSGGTIFDPMMVSTAERLQAIHSQAFTDYSRGKPDVTMGYGNFKAEETRQPQVMPAKDFDKSASSSGISKTPAVVKVSVTPKSARERDNSSVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWTQRQRNNVGTSGPGRRSHCSLTANLNIANHQGVSDTDNVSTQSKNNMLTQHIPAVINVAESSNNYQISHLIQDNVHPNKEEDVQHPIVVPKIKEEITTDSGLFEIVHKTKDNSSIIIINNNNNNNNNYSKTFISEEVKLAIAQQLKSKLNNPVPTVSGNETTGRSQEEIKKDVDEDNDDESELVIDEGKDVEEDAMEKKQSKEETKDKFSEGNIRVGVSSSAKDVDLASVSRLLDNATTHTQAFQRYFRGTHDGEDALEGSEEDEEGLVAGSNSEGNNSGSDENKSECELGNTNTSTTGVEKKKSAYSLAPNRVSCPYCPRTFPWTSSLRRHVLTHTGQKPYKCPHCSLLFTTKSNCDRHLLRKHGSQSASSASQGGSSSSSSETSPGSNSGNYTMRNVPERPYKCNYCPSSTFSTQSNLKKHVQTKHSPVSPGPALQPLIPRTVMSAEEGWNASTAGSSRPDSRYGGDESHGSGSDDAGDDRGTAQWEGSVKQQELDDRSVNNLSSSAADCQRSQLLSNNAAEGPKVYTSALETHTGGTTAVVSSADLPFKCHLCEGSYAERQEALEHIRESHPSEFELLMSKGALDSSCSTGTEDNNNVSSSSSSSVAPHPDDGNAGGEEGLEQLRGKFPDYANRKVKCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSNSTALYNSSATSTEDVSVVSGDEDHPSSGTALHSMLHHHTKKQHTGEDAARISADEEVGASLSGPVDGKPLKMTNHNNNNITTTSANKSIKQWDNDSENFTASAAAKILSSKFSLCTMGTPDRRDDAEDDNTDLIGNLLGIQGSIIDKVLQSKSAADEAARLFGVQNGENQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289194;
90% Identity: iTF_01289194;
80% Identity: -