Rluc031174.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010002331.1:44195-52311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.3 6.3e+02 1.9 0.4 1 14 218 231 218 239 0.76 2 19 0.0026 0.26 12.5 4.3 1 23 245 268 245 268 0.96 3 19 9.7e-05 0.0097 17.0 3.7 2 23 273 294 272 294 0.97 4 19 0.0031 0.31 12.3 2.4 1 23 330 352 330 352 0.98 5 19 0.00012 0.012 16.8 3.8 1 23 358 380 358 380 0.96 6 19 0.00025 0.025 15.7 3.1 1 23 467 489 467 489 0.98 7 19 0.00012 0.012 16.8 0.7 1 22 571 592 571 595 0.90 8 19 1.3 1.3e+02 4.0 0.2 1 23 750 772 750 772 0.91 9 19 0.00096 0.096 13.9 1.7 1 23 777 799 777 799 0.98 10 19 0.0016 0.16 13.2 0.3 2 23 807 829 806 829 0.96 11 19 0.00041 0.041 15.1 1.5 1 23 836 858 836 858 0.97 12 19 0.082 8.1 7.8 0.2 1 23 864 887 864 887 0.89 13 19 0.33 33 5.9 2.9 3 23 892 912 891 912 0.96 14 19 3.5e-06 0.00035 21.6 1.3 1 23 919 941 919 941 0.98 15 19 0.0061 0.61 11.4 1.9 1 23 947 969 947 969 0.97 16 19 4.5e-05 0.0045 18.1 0.8 1 23 975 997 975 997 0.97 17 19 2.6e-06 0.00026 22.0 3.6 1 23 1003 1025 1003 1025 0.99 18 19 0.00015 0.015 16.4 0.3 1 23 1031 1053 1031 1053 0.97 19 19 0.0034 0.34 12.1 3.2 1 23 1059 1082 1059 1082 0.96
Sequence Information
- Coding Sequence
- ATGACATCCTTCATCTCCTTGGTTGGTGATGATTCATCCACATCACAGGATAGGTATGCTGAGGTAATCCCAAACAGGCCTCGTCAAGAACTGAATAGTAATATTTATCCAAAAAATATTCCTCATTGTTTTATATGTGATGAGGAAATTATAGGCAGAGGGGTTCCTCTGTTAGTAAGCCATACATCCTACACAAAGACTGGACTTCCAACAAAAATAGGACAGCTGATGGGGGAAGGCTTCATGGTGGTTGTATCAATTGAAGATTTACTCTGCAGACGTTGTGGTGCTTTGTTGAATCACCTTGACAAATTAGAATCTGATCTGGATATTGTTAAACGGGCTTTAACAGGCTACTTGAAGATGAAGTATGGCCTTCTAGAAGATATTGATGAACAAATGGAGCCTCAGAAACCATATGTAACAAGTCAGAGAAATATAAAAGAAGTGCCTAACATGAGTGCAGATGTCACAAACAGTGACATAGAAGACATTGTTTCTGAGGACTCGCATGAGAGTGAATCAGAGGCCGAATCTTCACATGGAGCACTGAACAGCAATAGAACCATTGAAATTCTTCTAGATGAACGTCACAGTGCTTCCAAAGACAGTTCAGTACAAAAGAAAGACTCGTCTCCATCTCTGAAGCTATACAAGTGTACAACTTGTAATTTTAAAACATCTGAACTTGCTCTGTTCCATCCTCACATCTTGTCATGCAATAAGTTGCCTTACAAATGCAGTATGTGTGAGAAAAGGTTTGAAAGTCATAAATATGTAAGGCATCATATCATGGAAGCACATCTTTCAAATTGGACATGCCATTTTTGTAATAGAAACTTCAGTGATGAAAATGAATTCACATCACACATGAAGACACATTTAGGTTACAGAAGTGGTGCTCCAAAAATCCATGAAGAAGAAGCACAGTTAGCCAGTGACAGTGAAGACGCACTGTACGATTCTCCACATCATGAGCTTGGAAATTATGAATGTAATATTTGTGATTACCAGTGTAACAACAAAGAAGTGTTTGACAAACACATACGTAATCATGTTATGTTGAAACTTTTTCAGTGTAAAGTTTGTAAGAAGAGATTCCAGCACCAAGAAGATTTGACAGATCACATGTTTGACCACAAATCAGAGCTACTGTGTTCTACAGAATTTCAGAAGAAAAGTGGTGTATTAGAATATCAGCATAATCTTATGTCTGAAATGAAGGGAGAGACATTCCACATCAAGGAAGATGACATAACAGAATTATCAGACCAGAAATTAGATGCTGTCATGAAACCAACTTCTGATAAAGGGCAGCTGGATAGCTTACTCACAAAAACAGAGAAGCAGCCCAATGCAGAGCCATCTGATGAGTGCAGGGGAAATGAAATAGAATTTCATACATGCCACATATGTTCACTAACTTTTGTAAATGAATCTCTATTTATGGAACATATCAAGATGCATAAACAAGAAGACAGTAAGGAACTCTTCACACAAAATTCCAGTCAGCTCCTACAAATGGGAAAAGTAAATCTGGATATTGATTCAGCAGAACATGATGTTAACTCTATTGATTCAGAAGGACGACAACAGTATGTTGAAATGGATGAAAGTCTTGAGGACATGTTTGAAAAGATACATGCAGAGACAGAAACCAGTCCTTCTTCACAAAAAAAAGGTGTACCAAGCCAAAACACACTAGCAATATATAAATGCAACATTTGTCATGAGGGATTTGTGAACAGTGATGAACTGCAGCTGCATAAAGTAACACAAATGCATCTCAGTAATGATCCTCAGAATGACACAGCCATATTGATTGACAGTAAAAATGATGCTTCTGTTCCTGATACATCTGACCAGTGTAAGACTGAAGAAAATTTAACTGATATGCAACAAAGTGAAAGTATAACAGACAGTGAACTGTATACTCAAACATCATTAATTGGAGAAATTGAAAATCCAAAAGTTTTACCCATACAGAATAACCATTGCCAAATTCAAGAAAATGAAAATGCAAAGGATGGCTTTCTAGATATTTTTGATATGGTGAGAGAAAAAAAACTTTCTGCTGATGTCAGTGTTGAAATATGTCCCAGTTTATTGCAGGAAACACAGATGAAGTCAGAACAGATTGATGTGACTCCTGCAGTAGAGTGTCTTCCATACATATTAGACATGAAACATCAAAGTGACAGTGAGTTGTGTAATAGTGCCCCCAATCCAGCTCAGATTAAGAAAACTTATGTATGTGCGATGTGTGGTTATCGAACCCCTGCAATGTTTGATTTGAGGGGGCACTTTAAAGAACACAGACTGAAATCATTCCACTGCAAAATTTGCAACAAAGTTTTGCCAAGCACCCAGAAACTGTCTGCTCACTTGAGAAGCCATGAGAGGTTTCATGGAAAAATGACATGTCCATATTGTTATGGACAATTCCCTGACAGATACAGTCTTCAGCAACATTTGCAGGTGAAACATCAGAAGGAGAAGGTGATGTACAAGTGTTCATTTTGCAGTGAAACATTCAATACAAAGAAAGCTTACAAAGCACATGAGGAGATTCATCCAGAAAGATTTTCCTTCCGGTGTGATGAATGTGGTATGCCATTTCTGAAGGAGAAACAACTCATAGATCACAAGGAGGCCACTCACAGGGATCCACATTGTCGATTCTGCGGAAAAGAGATAGTGAAATCAAAGACCCTCAGAAATCATGAACTCCGACACATCAGACAAAAAGACAGTTTTGAGTGTGACATCTGTAAACGTGTGTTTAAAACAAAGACAGGTTTGAGGCACCACATTGCTGTGCACACTGGCGAGTACAAGTATTGCTGTGATTACTGTGGCCGAGGCTTCATGTCGCGCATGATGATGGAAGAGCACCGTAGTATGCACACCAAGGAGGAACGATACATCTGTGATGTGTGTGGTCGCAAGTTTAGTTTCCAAAGTACATACTGGATTCACCGTAAGTGGCATGACAACCCCTATCCTTATAAGTGCAGTTTCTGTGGCAGGATGTTCCGGCATTCATCATTGCTGGCAGTTCACAAGAGAACTCACACTGGTGAACGTCCATACAAATGTCCACATTGCCCATTAACGTTTCCTGTTGGTGGAACACTCAAGCGTCATCTTATCCTACACACTGGTGTATATCCTTTCAATTGTGAGAAATGCAAACGTGGCTTCACCACTCGACATAAGTATGCAACACATCTTGCAAAGGCCCATGGAGACTTTGAGATGCTTCATGCTAAGCCCCAACAGAGTGAGTTCAAAATGGTAATCCGAGATGACCCAAAACCCCTGCAACAATCAACAATCTGGGAAGTTGCAGGTGACTCTGTTCCAGACCAAATGAATTTCAAACTAGAGGCAGTTACAGGAGAGGATGACACAGGCAAAGACCCAGTTGAAGAAGGAGTTGCTTGCACTATAGTTGCAGATGACATGTTGGTGGATAACATGGTTCCTACAAGAGTAGTGGAAATTGTTCTAGATGACACTTCACAAGCCGTTGCAACAGTTACGCTAGCAGAACATGCAAATATCCTTCCTGATATCTGGTATCAATAG
- Protein Sequence
- MTSFISLVGDDSSTSQDRYAEVIPNRPRQELNSNIYPKNIPHCFICDEEIIGRGVPLLVSHTSYTKTGLPTKIGQLMGEGFMVVVSIEDLLCRRCGALLNHLDKLESDLDIVKRALTGYLKMKYGLLEDIDEQMEPQKPYVTSQRNIKEVPNMSADVTNSDIEDIVSEDSHESESEAESSHGALNSNRTIEILLDERHSASKDSSVQKKDSSPSLKLYKCTTCNFKTSELALFHPHILSCNKLPYKCSMCEKRFESHKYVRHHIMEAHLSNWTCHFCNRNFSDENEFTSHMKTHLGYRSGAPKIHEEEAQLASDSEDALYDSPHHELGNYECNICDYQCNNKEVFDKHIRNHVMLKLFQCKVCKKRFQHQEDLTDHMFDHKSELLCSTEFQKKSGVLEYQHNLMSEMKGETFHIKEDDITELSDQKLDAVMKPTSDKGQLDSLLTKTEKQPNAEPSDECRGNEIEFHTCHICSLTFVNESLFMEHIKMHKQEDSKELFTQNSSQLLQMGKVNLDIDSAEHDVNSIDSEGRQQYVEMDESLEDMFEKIHAETETSPSSQKKGVPSQNTLAIYKCNICHEGFVNSDELQLHKVTQMHLSNDPQNDTAILIDSKNDASVPDTSDQCKTEENLTDMQQSESITDSELYTQTSLIGEIENPKVLPIQNNHCQIQENENAKDGFLDIFDMVREKKLSADVSVEICPSLLQETQMKSEQIDVTPAVECLPYILDMKHQSDSELCNSAPNPAQIKKTYVCAMCGYRTPAMFDLRGHFKEHRLKSFHCKICNKVLPSTQKLSAHLRSHERFHGKMTCPYCYGQFPDRYSLQQHLQVKHQKEKVMYKCSFCSETFNTKKAYKAHEEIHPERFSFRCDECGMPFLKEKQLIDHKEATHRDPHCRFCGKEIVKSKTLRNHELRHIRQKDSFECDICKRVFKTKTGLRHHIAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCSFCGRMFRHSSLLAVHKRTHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCEKCKRGFTTRHKYATHLAKAHGDFEMLHAKPQQSEFKMVIRDDPKPLQQSTIWEVAGDSVPDQMNFKLEAVTGEDDTGKDPVEEGVACTIVADDMLVDNMVPTRVVEIVLDDTSQAVATVTLAEHANILPDIWYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370392;
- 90% Identity
- iTF_00370392;
- 80% Identity
- -