Cfor003786.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01012977.1:46476-58410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.4 2.6e+02 1.9 0.4 1 14 206 219 206 227 0.76 2 19 0.0021 0.1 12.6 4.4 1 23 233 256 233 256 0.96 3 19 8.3e-05 0.004 17.0 3.7 2 23 261 282 260 282 0.97 4 19 0.0027 0.13 12.3 2.4 1 23 318 340 318 340 0.98 5 19 0.00078 0.038 14.0 5.7 1 23 346 368 346 368 0.96 6 19 0.011 0.53 10.4 5.6 1 23 455 477 455 477 0.98 7 19 0.0003 0.015 15.3 1.0 1 22 559 580 559 583 0.90 8 19 0.25 12 6.1 0.2 1 23 737 759 737 759 0.96 9 19 6.2e-05 0.003 17.4 0.4 1 23 764 786 764 786 0.99 10 19 0.0013 0.065 13.2 0.3 2 23 794 816 793 816 0.96 11 19 0.00016 0.0075 16.2 1.4 1 23 823 845 823 845 0.97 12 19 0.066 3.2 7.9 0.1 1 23 851 874 851 874 0.89 13 19 0.28 14 5.9 2.9 3 23 879 899 878 899 0.96 14 19 3e-06 0.00014 21.6 1.3 1 23 906 928 906 928 0.98 15 19 0.0052 0.25 11.4 1.9 1 23 934 956 934 956 0.97 16 19 3.9e-05 0.0019 18.1 0.8 1 23 962 984 962 984 0.97 17 19 2.2e-06 0.00011 22.0 3.6 1 23 990 1012 990 1012 0.99 18 19 0.00013 0.0064 16.4 0.3 1 23 1018 1040 1018 1040 0.97 19 19 0.0029 0.14 12.2 3.2 1 23 1046 1069 1046 1069 0.96
Sequence Information
- Coding Sequence
- atgaagaaaataacattacaaactACAAAAAAGCCAAACAGGCCTCATCAAGAACTGCACAGTaatatttattctaaaaatattaTTCCTCATTGTTTTATATGTGATGAGGAAATAATAGGCAGAGGGGTTCCTCTGTTAATAAGCCATACATCCTACACAAAGACTGGACTTCCAACAAAAATAGGACAGCTGATGGGGGAAGGCTTCATGGTGGTTGTATCAATTGAAGATATGCTCTGCAGACGTTGTGGTGCTTTGTTGAATCACCTTGACAAATTAGAATCTGATCTGGATATTGTTAAACGGGCTCTAACAGGCTACTTGAAGATGAAGTATGGCCTTCTGGAAGATAGTGATGAACAAATGGAGCCACAGAAAGAATATATAACAAGTCAGAGAAACATAAAAGaagtgCCTAACATGAGTGCAGATGTCACAAACAGTGACATAGAAGACGTTTCTGAGGACTCGCATGAGAGTGAATCAGAGGCCGAATCTTCCCATGGAGCACCGAACAGTAATAGAACCATTGAAATTCTTCTAGATGAACGCCACAGTGCTTCCAAAGACAGCTCAGTACAAAAGAAAGACTCATCTCCATCTCCGAAGCTATACAAATGTAcaacttgtaattttaaaacatctgaACTTGCTTTGTTCCATCCTCACATCTTATCATGTAATAAGTTGCCTTACAAATGCACCATGTGTGAGAAAAGGTTTGAAAGTCATAAATATGTAAGGCATCATATCATGGAAGCACATCTTTCAAACTGGACGTgccatttttgtaatagaaACTTCAGTGATGAAAATGAATTCACATCACACATGAAGACACATTTAGGTTACAGAAGTGGTGCCCCAAAAATCCATGAAGAAGGAGCACTCTTAGCCAGTGACAGTGAAGACACACTGTACAATTCTCCACATCATGAGCTTGGAAATtatgaatgtaatatttgtgattACCAGTGTAACAACAAAGAAGTGTTTGACAAACACATACGTAATCATGTTACATTGAAACTTTTTCAGTGTAAAGTGTGTAGGAAGAGATTCCATCACCAAGAAGATTTGACAGATCACATGTTTGACCACAAACCAGAGCTGTTGTGTTCTACAGAATTTCAGAAGAAAAGTGGTGTATTAGAATATCGGCATAATCTTATGTCAGAAATGAACGGAGAGACAATCCACATCAAGGAAGATGACATAACAGAATTATCAGACCAGAAATTAGATGCTGTCATAAAACCAACATCTGATAAGGGGCAGATGGATAGCTTATTCACAAAATCAGAGAAGCAGCCCAACGCAGAGCCATCTGATGAGTGCAGGGGAAATGAAATAGAATTTCATACATGCCACATATGTTCACTAACTTTTGTAAATGAATGTCTATTTATGGAACATATCAAGATGCATAAACAAGAAGACAGTAAGGAACTCTTCACCCAAAATTCCAGTCAGCTCCTGCAGACGGGAAAAGTAAATCTGGATATTGATTCAGCAGAACATGATGTTAACTCTGTTGATTCAGAAGGACGACAACAGTATGTTGACATGGATGAAAGTCTTGAGTACATGTTTGAAAAGATACACGCAGAGACAGAAACCAGCCcttcttcagaaaaaaaagttcTACCAAGCCAAAACACACTAGCAGTGTATAAATGCGACATGTGTCATGAGGAATTTGTGAACAGTGATGAGCTGCAGCTGCATAAAGTAACAAAGATGCATCTCAGTAATGATCCTCAGAATGACACAGCCATATTGATCGACAGTCAAAATGATGCTTCTGTTCCTGATACATCTGACCAGTGTAaggctgaagaaaatttaactgATACGCAACAAAGTGAAATTATAACAGGGAGTGAACTGTATACTCAAACATCATTAATTGGACATATTGAAAATCCAAGAGTTTTACCCATAGAGAATCActgcaaaattcaagaaaatgaaaatgcaaaGGATGGCTTTCTAGATATTTTTGATATGGTGAGAGAAAAAAAACTTTCTGCTGATGTCAATGTTGAAATTTATCCCAGCTTATTGCAGGAAACACAGATGAAGACAGAACAGATTGATGTGACTCCTGCAGTAGAGTGTCTTCCGTACATATCAGACATGAAACATCAAAGTGACAGCGAGTTATGTAACAGTGCACCCACTCCAACTCAGAATAAGAAGACTTATGTGTGTGCAATGTGTGGTTATCGAACTCCTGCAATGCTTGATTTGAGGAGGCACTTTAAAGAACATAGACTGAAATCATTCCAGTGCAAAATTTGCAACAAAGTGTTGCCAAGCACCCAGAAACTGTGGGCTCACTTAAGAAGCCACGAGAGGTTTTGTGGAAAAATGACATGTCCGTATTGTTATGGACAATTCCCTGACAGATACAGCCTTCAGCAACATTTGCAGGTGAAACATCAGAAGGAGAAAGTGATGTACAAGTGTTCATTTTGCAGTGAAACTTTCAGTACAAAGAAAGCTTACAAAGCACATGAGGAGATTCATCCAGAAAGATTTTCCTTCCGGTGTGATGAATGTGGTATGCCATTTCTGAAGGAGAAGCAACTCATTGATCACAAGGAAGCCGCTCACAGGGATCCACATTGTCGATTTTGCGGAAAAGAGATAGTGAAATCAAAGACCCTCAGAAATCATGAACTCCGACACATCAGACAAAAAGACAGTTTCGAGTGTGACATCTGTAAGCgtgtgtttaaaacaaaaacaggttTGAGGCACCACATTGCTGTGCACACTGGCGAGTACAAGTATTGCTGTGATTACTGTGGCCGAGGCTTCATGTCACGCATGATGATGGAAGAGCATCGCAGTATGCACACCAAGGAGGAACGATACATCTGTGATGTATGTGGTCGCAAGTTTAGTTTCCAGAGTACATACTGGATTCACCGTAAGTGGCATGACAACCCCTATCCTTATAAGTGCAGTTTCTGTGGCAGGATGTTCCGGCATTCATCGTTGCTGGCAGTACACAAGAGAACTCACACTGGTGAACGTCCATACAAATGTCCACATTGCCCATTAACATTTCCTGTTGGTGGAACACTCAAGCGCCATCTTATCCTACACACTGGCGTGTATCCATTCAATTGTGAGAAGTGCAAACGTGGCTTCACCACGCGACATAAGTATGCAACACATCTTGCAAAGGCCCATGGAAACTTTGAGATGCTTCATGCTAAGCCCCAACAAAGTGAGTTCAAAATGGTAATCCGAGATGACCCAAAACCCATGCAGCAATCAACAATCTGGGAAGTTACAGATGACTGTGTTCCAGACCAAATGAATTTCAAATTAGAGACAGTTACAGGAGAGGATGATACAGGCAAAGACCCAGTTGAAGAAGGAGTTGCTTGCACTATAGTTGCAGATGACATGTTGGTGGATAACATGGTTCCTGCAAGAGTAGTGGAAATTGTTCTAGATGACACTTCACAAGCCGTTGCAACAGTTACACTAGCAGAACATGCAAATATCCTTCCTGATATCTGGTATCAGTAG
- Protein Sequence
- MKKITLQTTKKPNRPHQELHSNIYSKNIIPHCFICDEEIIGRGVPLLISHTSYTKTGLPTKIGQLMGEGFMVVVSIEDMLCRRCGALLNHLDKLESDLDIVKRALTGYLKMKYGLLEDSDEQMEPQKEYITSQRNIKEVPNMSADVTNSDIEDVSEDSHESESEAESSHGAPNSNRTIEILLDERHSASKDSSVQKKDSSPSPKLYKCTTCNFKTSELALFHPHILSCNKLPYKCTMCEKRFESHKYVRHHIMEAHLSNWTCHFCNRNFSDENEFTSHMKTHLGYRSGAPKIHEEGALLASDSEDTLYNSPHHELGNYECNICDYQCNNKEVFDKHIRNHVTLKLFQCKVCRKRFHHQEDLTDHMFDHKPELLCSTEFQKKSGVLEYRHNLMSEMNGETIHIKEDDITELSDQKLDAVIKPTSDKGQMDSLFTKSEKQPNAEPSDECRGNEIEFHTCHICSLTFVNECLFMEHIKMHKQEDSKELFTQNSSQLLQTGKVNLDIDSAEHDVNSVDSEGRQQYVDMDESLEYMFEKIHAETETSPSSEKKVLPSQNTLAVYKCDMCHEEFVNSDELQLHKVTKMHLSNDPQNDTAILIDSQNDASVPDTSDQCKAEENLTDTQQSEIITGSELYTQTSLIGHIENPRVLPIENHCKIQENENAKDGFLDIFDMVREKKLSADVNVEIYPSLLQETQMKTEQIDVTPAVECLPYISDMKHQSDSELCNSAPTPTQNKKTYVCAMCGYRTPAMLDLRRHFKEHRLKSFQCKICNKVLPSTQKLWAHLRSHERFCGKMTCPYCYGQFPDRYSLQQHLQVKHQKEKVMYKCSFCSETFSTKKAYKAHEEIHPERFSFRCDECGMPFLKEKQLIDHKEAAHRDPHCRFCGKEIVKSKTLRNHELRHIRQKDSFECDICKRVFKTKTGLRHHIAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCSFCGRMFRHSSLLAVHKRTHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCEKCKRGFTTRHKYATHLAKAHGNFEMLHAKPQQSEFKMVIRDDPKPMQQSTIWEVTDDCVPDQMNFKLETVTGEDDTGKDPVEEGVACTIVADDMLVDNMVPARVVEIVLDDTSQAVATVTLAEHANILPDIWYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289155;
- 90% Identity
- iTF_01289155;
- 80% Identity
- -